Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1552 ATGGAGAATCGGaaggtggaggaggaggtgcGTGTTAGGGAGGAGGATGATGACGTGGCGGCGGAGGAAGAGGAGGATGAAGGAGTGGTGGGCTCCAGCTTGACCTTGGAGAGGGTCGCTGCAGCTAAGAAATTCATCGAGAATCATTACAGGGCTCAGATGAAACACATTCAAGAACGCAAGGAGAGGCGTTCAGTGCTACAAAAGAAGTTAGCGTCTTCTCAAGTACCAGAAGAGGAACAGATCAATCTGTTGAAGGATTTAGAGCGCAAGGAAACTGAGTATATGCGAttaaaaagacataaaatatatgttgatgattttgACCTTCTAACCATTATTGGCAGGGGGGCCTTTGGGGAgGTAAGACTCTGTCGTGAAAAGAAATCAGGCAATATATATGCCatgaaaaagttgaaaaagtcTGAAATGCTCAGCAGGGGACAGGTTGAGCATGTTAGAGCTGAAAGGAATGTACTTGCAGAAGTTGCCTGTGACTGCATTGTGAAACTCTATTACTCTTTTCAAGATGCTGAACACTTATATCTCATAATGGAATATTTGCCTGGTGGTGATATAATGACTTTGTTGATGAGGGAAGAAACTTTGACTGAAACTGTGGCTAGATTTTACATTGCCCAAAGCGTTTTGGCCATAGAGTCTATTCATCAACACAACTACATTCATCGAGATATAAAACCCGACAACCTTCTATTGGACAAAAATGGTCACATGAAGCTGTCTGATTTTGGTCTTTGCAAGCCACTTGACTGCTCAAGTCTATCAtctataaatgaaaatgaaatccTGGATGATGAGAACTTGAATGATACCATGGATGTTGATGGAGGCTTCCCAAATGGCAGAAATGGTAGGCGCTGGAAAAGTCCCCTTGAACAACTTCAACATTGGCAAATTAACAGGAGGAAGTTGGCATTTTCCACTGTTGGAACTCCAGACTATATTGCTCCTGAAGTATTACTGAAAAAGGGTTACAGTGTGGAGTGCGACTGGtttgtttatatacatattttttcattctgTCGCTTGAGTTGCATCTATCCATTTTTTGTATCAATAGTTTTGTCATTTTGA 1095 0.3836 MENRKVEEEVRVREEDDDVAAEEEEDEGVVGSSLTLERVAAAKKFIENHYRAQMKHIQERKERRSVLQKKLASSQVPEEEQINLLKDLERKETEYMRLKRHKIYVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVACDCIVKLYYSFQDAEHLYLIMEYLPGGDIMTLLMREETLTETVARFYIAQSVLAIESIHQHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSSLSSINENEILDDENLNDTMDVDGGFPNGRNGRRWKSPLEQLQHWQINRRKLAFSTVGTPDYIAPEVLLKKGYSVECDWFVYIHIFSFCRLSCIYPFFVSIVLSF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1552 364 ProSiteProfiles Protein kinase domain profile. 108 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1552 364 Coils Coil 5 25 - -
Ssu1g1552 364 Gene3D Transferase(Phosphotransferase) domain 1 192 258 - -
Ssu1g1552 364 PANTHER AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN 29 343 - -
Ssu1g1552 364 SUPERFAMILY Protein kinase-like (PK-like) 90 339 IPR011009 -
Ssu1g1552 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Ssu1g1552 364 Gene3D Phosphorylase Kinase; domain 1 66 191 - -
Ssu1g1552 364 Pfam Protein kinase domain 110 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1552 364 MobiDBLite consensus disorder prediction 13 28 - -
Ssu1g1552 364 SMART serkin_6 108 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1552 364 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g1552 364 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Ssu1g1552 364 PANTHER SERINE/THREONINE-PROTEIN KINASE 29 343 - -
Ssu1g1552 364 Gene3D Transferase(Phosphotransferase) domain 1 314 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1552 Ssu-Chr1 36780624 36785774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1552 17 363 AGC Kinase Gene Family AT4G33080 74.425 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Ssu1g1552 Pkinase 5.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1552 K08790 - gmx:100811359 581.637