Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1550 ATGACAACGAATAGATCCTCTAATGCATATTTTTGGCTTATGAATTTCTTCATTTTGAGTGTGGGTGCTCAATTGACCCCTGATTTTTATAAGACAACATGCCCTGATGTTTTTAGAATACTTAGGAGAGAGGTTCAAAAAGCTCTAAAAAATGAGATGCGAATGGGTGCTTCCTTGCTTCGGCTTCATTTCCATGATTGCTTTGTAAATGGTTGTGATGGTTCAGTTTTGCTGGATGGAGGCCAAGATAGTGAGAAATTTGCTACTCCTAACTTGAATTCTGCTAGAGGATTTGAAGTTATAGATACAATCAAAAGTTCAGTGGAGAGGGCATGTAGTGGAGCTGTGTCCTGTGCTGATATATTAGCCATAGCGGCCAGAGATTCTGTTATCCTCATACCATTGTTTCAAAGTTTAATAACGTGGGCCTCGATCTCAAAGACTTGTTACTTTATCAGCAGTAGATTGTTCAACTTCTCGGGGTCAGGAGCACCTGACAGTACAATAGAAACCACTATGCTCACTGAATTGCAAAATTTGTGCCCACAAAATGGTGATGGGAACACAACTAGTGTGCTAGACCAAGGGTCAGTGGATCTATTTGATAGCCACTACTTCAAGAACTTGCTCGATGGGAAGGGTCTCCTTAGCTCTGACCAGATTCTCTTTTCGAGTGATAATGCCACAGCAACTACTAAACCTTTGGTCCAATTTTATAGCGTTAATGAAAGAATTTTCTTTATGGAATTTGCCTATGCCATGATCAAGATGGGGAATATAAATCCTCTAACTGATTCTGAGGGTGAGATCCGGAGGAATTGCAGagtaattaattcttaa 840 0.3976 MTTNRSSNAYFWLMNFFILSVGAQLTPDFYKTTCPDVFRILRREVQKALKNEMRMGASLLRLHFHDCFVNGCDGSVLLDGGQDSEKFATPNLNSARGFEVIDTIKSSVERACSGAVSCADILAIAARDSVILIPLFQSLITWASISKTCYFISSRLFNFSGSGAPDSTIETTMLTELQNLCPQNGDGNTTSVLDQGSVDLFDSHYFKNLLDGKGLLSSDQILFSSDNATATTKPLVQFYSVNERIFFMEFAYAMIKMGNINPLTDSEGEIRRNCRVINS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1550 279 PANTHER PEROXIDASE 4 132 - -
Ssu1g1550 279 Gene3D - 259 278 - -
Ssu1g1550 279 Gene3D - 25 140 - -
Ssu1g1550 279 PANTHER PEROXIDASE 147 277 - -
Ssu1g1550 279 SUPERFAMILY Heme-dependent peroxidases 24 278 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PANTHER PEROXIDASE 72-RELATED 147 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PANTHER PEROXIDASE 72-RELATED 4 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 CDD secretory_peroxidase 24 277 IPR033905 GO:0004601|GO:0042744
Ssu1g1550 279 PRINTS Haem peroxidase superfamily signature 194 209 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 Pfam Peroxidase 42 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 Pfam Peroxidase 148 239 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1550 279 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Ssu1g1550 279 Gene3D Peroxidase, domain 2 148 258 - -
Ssu1g1550 279 ProSiteProfiles Plant heme peroxidase family profile. 24 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1550 Ssu-Chr1 36732397 36734534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1550 21 279 Peroxidase AT5G19890 50.654 4.92e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1550 K00430 - gmx:100817622 361.688