Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1548 ATGGCAGGTGTTGCACCTGAGGGATCACAGTTTGATGCTCGTCAGTTTGATACCAAGATGAATGAGTTGCTTACAGCTGATGGACAGGACTTCTTCACATCTTACGATGAGGTTTATGACAGTTTTGATGCCATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTACGCATATGGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAACAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGAATTCTGCAGCAACTTGACTATAGTTTGACAGAATGCCAAGCCTTGGTTTTAGCGCCAACTCGGGAGCTTGCCCAGCAGATTGAAAAGGTTATGCGGGCACTTGGAGATTACCTTGGTGTGAAGGTGCATGCATGTGTGGGAGGTACCAGCGTTCGTGAAGACCAACGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGATTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGATCTACGATATATTCCAGCTGCTTCCAACTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCACTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGAATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATCAAGCAGTTTTATGTCAATGTCGAGAAAGAGGAATGGAAGCTTGACACACTCTGTGATCTTTATGAGACATTGGCAATTACTCAGAGTGTCATTTTTGTGAACACCAGAAGAAAGGTTGATTGGCTAACTGACAAGATGCGAAGCCGAGACCACACAGTCTCAGCAACCCATGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCTCGTGTTTTAATAACTACTGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTGtctttagttataaattatgaTCTCCCAACGCAGCCTGAGAACTATCTCCATCGTATTGGACGTAGTGGAAGGTTTGGTAGGAAAGGTGTTGCCATCAACTTTGTCACAAGGGATGATGAAAAAATGCTGTTTGACATCCAGAAGTTTTACAATGTGATAGTTGAGGAGCTGCCTTCAAATGTTGCTGAACTCCTCTGA 1242 0.4428 MAGVAPEGSQFDARQFDTKMNELLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPTKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDEKMLFDIQKFYNVIVEELPSNVAELL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1548 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Ssu1g1548 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Ssu1g1548 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Ssu1g1548 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Ssu1g1548 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Ssu1g1548 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Ssu1g1548 413 Gene3D - 30 248 IPR027417 -
Ssu1g1548 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Ssu1g1548 413 CDD SF2_C_DEAD 253 383 - -
Ssu1g1548 413 CDD DEADc_EIF4A 44 242 - -
Ssu1g1548 413 SMART helicmild6 293 374 IPR001650 -
Ssu1g1548 413 SMART ultradead3 59 256 IPR014001 -
Ssu1g1548 413 Gene3D - 249 413 IPR027417 -
Ssu1g1548 413 PANTHER RNA HELICASE 23 413 - -
Ssu1g1548 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-8-LIKE 23 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1548 Ssu-Chr1 36717748 36719713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1548 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 88.889 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1548 K03257 - gmx:100786735 809.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1548 1 36717748 36719713 Ssu1g1548 1 36717748 36719713 ECH
Ssu6g0636 6 9889479 9891745 Ssu1g1548 1 36717748 36719713 PCT