Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1545 ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTCGGCCGTAAGATCGGTAGCGGATCGTTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAATGAAGAGGTTGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAATTGCTGTACGAGTCCAAATTGTACAGAGTTCTCCAGGGAGGAACTGGAATTCCAGATGTTAGATGGTTCGGAGTGGAGGGAGATTACAATGTCCTAGTGATGGATCTGCTTGGACCTAGTCTTGAAGATCTATTTAACTTCTGCTGTAGAAAGCTCTCACTAAAGACAGTTCTCATGCTTGCTGATCAAATGatCAACCGTGTTGAGTTTGTTCATTCTAAATCATTTCTACATCGGGATATCAAACCAGATAATTTCCTAATGGGCTTAGGAAGGCGGGCAAACCAGGTTTACTGTATTGATTTCGGTTTGGCAAAGAAATACAGAGATAGTTCGACCCATCAACACATTCCTTACAGggaaaataagaatttaactgGGACCGCTAGATATGCGAGTATGAATACCCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTGGAGTCTCTTGGTTATGTCTTAATGTATTTCTTGAGAGGAAGTCTACCTTGGCAAGGACTTAAAGCAGGGACCAAGAAACAGAAGTACGAGAGAATCAGTGAAAAAAAGGTTTCTACCCCGATTGAGGCCTTGTGTCGAGGTTATCCTACAGAATTTGCATCATACTTCCATTACTGCCGCTCATTAAGGTTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGCGACCTGTTTATTCGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACAATCTTGAAGTATCAACAATCACAGCTAGCCGCTCCTCCAGCACGTGCTGTTGGTCCTAGTGCTGGAACTAGTTCTGCAATGCCGCCGGCTGTGACTAATGCTGATAGACTGACAGGAGAAGAAGGGCGACCTCCTGGTCTGGTTTCAGTGGATTCCACAAGACGAAGAATGTCAGGGCCCATTTTAAATTCTGTAAATATTTCAAAGCAGAAAAATCCAGTCACCACTGATGCTGCCGTTAATAAGGAAGCCATGTTATCTAGTACCAATATCTTGGGCCAGTCAAGTGGATCAAGGCGAGTTGCTGGCCGTGATGCATTTGTTGGTGCTGATTTGGATCTTCGTACTCGTACTACTGAGGCTAACCCTGGAACAGCGCGCAGAAAATTTGGATCATCTGGGAGAAATGCTACTCATGTCAAGAATTATGAAACTGCAGTCAAGGGCATTGAGGGTTTgcaattagaaaatgatgagaGAGCCCATTATTAA 1365 0.4205 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRVLQGGTGIPDVRWFGVEGDYNVLVMDLLGPSLEDLFNFCCRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYERISEKKVSTPIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLAAPPARAVGPSAGTSSAMPPAVTNADRLTGEEGRPPGLVSVDSTRRRMSGPILNSVNISKQKNPVTTDAAVNKEAMLSSTNILGQSSGSRRVAGRDAFVGADLDLRTRTTEANPGTARRKFGSSGRNATHVKNYETAVKGIEGLQLENDERAHY 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1545 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Ssu1g1545 454 Gene3D Transferase(Phosphotransferase) domain 1 1 313 - -
Ssu1g1545 454 PANTHER CASEIN KINASE I-LIKE 1 432 - -
Ssu1g1545 454 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1545 454 PANTHER CASEIN KINASE-RELATED 1 432 - -
Ssu1g1545 454 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1545 454 MobiDBLite consensus disorder prediction 305 343 - -
Ssu1g1545 454 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Ssu1g1545 454 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1545 454 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu1g1545 454 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1545 Ssu-Chr1 36681852 36689456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1545 7 223 EF-hand Containing Proteins AT2G17890 25.333 5.13e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ssu1g1545 Pkinase 7.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1545 K02218 - gmx:100786777 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1545 1 36681852 36689456 Ssu1g1545 1 36681852 36689456 ECH
Ssu6g0640 6 9930424 9936335 Ssu1g1545 1 36681852 36689456 PCT