Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1541 ATGTACACGAGAAGTGGGTTCTCGGATTCAAACGATGCCAGCAACAGCAGCGGCGCGTGCTGCGGTGGCGAAGCTTATTCGAGTGCCTCAGTTGTCACGCCGCTGAGGCTTCTCTCGGAGAATCTGGGGTCAATCCTGGAGGAGGGGGTTGACTTTTTCTCCGACGGGAAGATCGTGGCCGGCGATGGCCGGGAGGTGGCGGTGCACCGGTGCATTCTGGCGGCGAGGAGCTGCTTCTTCAAGACCGCGTTCGCGGGTGGCGGCGTGCTCCGGCTGAAGGAAGTGGCCGGGGACTATGATGTCCGGTCGGAAGCGCTTTCGATTGTTCTGGCTTATTTGTACAGTGGGGGGGTGAAGCCTTTGCCACAAGGTGAAGGTGGTGGTTGCGTGTGTATGGATGACGTGTGTTCCCATTTTGGGTGCAGGCCCGCTGTGGATTTCTTGCTTCAGCTCCTCTATGCTTCCTCCACTTTTCAAATCTCTGAGTTGGTGGCTCTTTATCAGGGACATCTACTAGAAATTCTTGACAAGGTAGCAACAGATGACATTTTGGTGGTTCTATTGGTCGCAAATATATGTGGCAAAATGTGTGACATACTGCTAGCAAGGTGTACCGAGATCATAGTTAAATCTGATGATGATATCACCACTCTTGAAAAGGCACTGCCTCAACCCTCGGTGAAACAAATCATGGATAAACGAAGAGTACTGGGCCTGTACATGCCCGAAAACTTCAATTTTCCCGACAAACATGTTAACAGGATACACAGGGCTCTGGATTCAGACGATGTGGAGTTAGTAAGATTGCTTTTGAAAGAGGGGCACACCACTCTAGATGATGCCTGTGCACTTCACTATGCTGTTGCATACTGTGATGTGAAGACCACCACTGAGCTTCTTGATCTTGGTCTTGCTGATGTCAACCACAAAAACCATAGGGGCTATAGTGTGCTGCACCTTGCTGCAATGAGGAAAGAGCCTAAGATTATAGTTTCTCTCTTGACTAAGGGAGCACAGCCTTCTGATCTTACTTTGGATGGTAGAAAGGCCCTTCAGATTTCAAAGCGTCTCACTAAAGCTGTGGATTATTATAAGTCCACAGAAGAAGGAAAGGTATCATGCAATGACCGATTGTGCATAGAGATATTGGAGCAAGCTGAGAGAAGGGAACCTTTACTTGGAGAGGCATCTCTTTCTCTTGCTATGGCAGGGGATGATTTGCGTAGTGAAATTGTTGTACCTAGAAAATAG 1251 0.49 MYTRSGFSDSNDASNSSGACCGGEAYSSASVVTPLRLLSENLGSILEEGVDFFSDGKIVAGDGREVAVHRCILAARSCFFKTAFAGGGVLRLKEVAGDYDVRSEALSIVLAYLYSGGVKPLPQGEGGGCVCMDDVCSHFGCRPAVDFLLQLLYASSTFQISELVALYQGHLLEILDKVATDDILVVLLVANICGKMCDILLARCTEIIVKSDDDITTLEKALPQPSVKQIMDKRRVLGLYMPENFNFPDKHVNRIHRALDSDDVELVRLLLKEGHTTLDDACALHYAVAYCDVKTTTELLDLGLADVNHKNHRGYSVLHLAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVDYYKSTEEGKVSCNDRLCIEILEQAERREPLLGEASLSLAMAGDDLRSEIVVPRK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1541 416 SMART BTB_4 54 175 IPR000210 GO:0005515
Ssu1g1541 416 Pfam BTB/POZ domain 52 120 IPR000210 GO:0005515
Ssu1g1541 416 ProSiteProfiles Ankyrin repeat profile. 313 345 IPR002110 GO:0005515
Ssu1g1541 416 Gene3D Potassium Channel Kv1.1; Chain A 23 210 IPR011333 -
Ssu1g1541 416 SUPERFAMILY Ankyrin repeat 244 355 IPR036770 -
Ssu1g1541 416 PANTHER REGULATORY PROTEIN NPR2 3 411 - -
Ssu1g1541 416 Pfam Ankyrin repeats (3 copies) 256 340 IPR002110 GO:0005515
Ssu1g1541 416 Gene3D - 242 389 IPR036770 -
Ssu1g1541 416 CDD BTB_POZ_NPR_plant 36 175 - -
Ssu1g1541 416 SMART ANK_2a 279 309 IPR002110 GO:0005515
Ssu1g1541 416 SMART ANK_2a 313 342 IPR002110 GO:0005515
Ssu1g1541 416 SMART ANK_2a 250 278 IPR002110 GO:0005515
Ssu1g1541 416 Pfam NPR1/NIM1 like defence protein C terminal 355 410 IPR021094 -
Ssu1g1541 416 PANTHER REGULATORY PROTEIN NPR3 3 411 IPR044292 GO:0009862|GO:2000022|GO:2000031
Ssu1g1541 416 ProSiteProfiles Ankyrin repeat region circular profile. 313 339 - -
Ssu1g1541 416 SUPERFAMILY POZ domain 51 172 IPR011333 -
Ssu1g1541 416 ProSiteProfiles BTB domain profile. 54 122 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1541 Ssu-Chr1 36570765 36572798 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Ssu1g1541 Ank_2 1.9e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1541 K14508 - gmx:100800032 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1541 1 36570765 36572798 Ssu1g1541 1 36570765 36572798 ECH