Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1534 ATGCACCGCATGGAAAGTATCTTCTCTCTCCCTGTAGCCGCCAGGACTGAATTTATCCATTTTCTGGTCCAGTCTTTTGGCTGCAGTTACATTTGTCTGTGGGCATATGATTCCATTTCAcccaacCGTTTGTGCTTCTTGGATGGTATCTACAATGTAAGAAACAACCAACCAAGCTCTAGTTTGGGGAGTGTGGCACAACAGCTTTTCAGTCAGTTCCGGACATTAACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAAGAGCCAGCGTCCCTACCTAGAGCTGCAACAATTAGAACTTCTGAGACTGGCATCCACAGAAATACAAACACAATTCTTTCAGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAAGGCGAAATTGAGCTTGGTTTCTTAAATATGTCCCAAGTTGACATCCAAACAGCACTTAGGAGTTTGTTTCCTGAAGATTTTTCGAGACAGTCCCAGCAAATTGATCAAAACCCACCTacatcatcttcatcttctttgagATCAATATCCACAGGTAGCCCTGAATACTCGTCTCTTCTGTTCAGTATTCCAGGCTCTTCTCAGCCCCACTTTCCTGAGACCCTTGGAGGAGCAAGAGTGCCCCCAATGCAGCCAGTGCCAAACACAGCCACTAGCCCTCACCAACAAGCCATTCAAGCATTGGCACAAGGCCCTCTAACCCAATTCCCCACGCAAGAAATTGAACATGATGCAATCATGCGAGCAATCCTCCAAGTTATATCGTCAACCTCTCAGCAGCATCAAAACTTGCCTTATGCTCCTGTGGTGCATCCAGAAGCTAGTGCTTTCCACAGGTATAGAGCAGACATAGGTCCCAATATGGCGCCCCAAAAGGGATCCAATTTCAGAACGCAAAGCCTCATGAAGAGATCTTTTGCATTCTTTAGGAACCtaaattttatgagaatgagagaacgCATTCAAGCAACGTCCCGTCCCTCTAATACCCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTAAACGAGAATTTTCAAGCACTTAGAGCACTACTTCCTCCGGGAACAAAGAAAGACAAAGCGTCTATACTAATAGCAGCAAAGGAGACATTGAGCTCTTTGATAGCTGAAGTTGATAAACTAAGCAAAAGGAATCAGGGGTTGACGTCACTTTTGCCAGCCAAAGAATCTACAACTGAAGAAACCAAGGCTAATTTATTATCatcaaatgaaagaataaatgtTGGAGTTTCACATGTACCCGAATCAAGCTCATCAGAAGAGCGAATGGTGGAGTTGCAAGTGAATGTGAGAGGACAAATTTCTCAAATTGATTTGTTAATCCGGTTATTGGAATTCTTAAAACGGGCTCACCGCGTGAGCTTGGTTTCCGTGGACGCAAACACCCACATTGCAGAAGGGAATAATGTCCTTCATCAACTAACCTTCAGGTTAAGAATTATTCAGGGAAGTGAATGGGACGAGTCTGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGGCACAGTACCAAGTGGACCAACAACTTTGA 1584 0.4268 MHRMESIFSLPVAARTEFIHFLVQSFGCSYICLWAYDSISPNRLCFLDGIYNVRNNQPSSSLGSVAQQLFSQFRTLTFDVNDDRVPGLAFKSQRPYLELQQLELLRLASTEIQTQFFQEARIKTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPEDFSRQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGSSQPHFPETLGGARVPPMQPVPNTATSPHQQAIQALAQGPLTQFPTQEIEHDAIMRAILQVISSTSQQHQNLPYAPVVHPEASAFHRYRADIGPNMAPQKGSNFRTQSLMKRSFAFFRNLNFMRMRERIQATSRPSNTQLHHMISERRRREKLNENFQALRALLPPGTKKDKASILIAAKETLSSLIAEVDKLSKRNQGLTSLLPAKESTTEETKANLLSSNERINVGVSHVPESSSSEERMVELQVNVRGQISQIDLLIRLLEFLKRAHRVSLVSVDANTHIAEGNNVLHQLTFRLRIIQGSEWDESAFQEAVRRVVADLAQYQVDQQL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1534 527 SMART finulus 340 389 IPR011598 GO:0046983
Ssu1g1534 527 Coils Coil 373 393 - -
Ssu1g1534 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Ssu1g1534 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 397 IPR036638 GO:0046983
Ssu1g1534 527 CDD bHLH_AtbHLH_like 339 391 IPR045239 -
Ssu1g1534 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 518 - -
Ssu1g1534 527 Pfam Helix-loop-helix DNA-binding domain 338 383 IPR011598 GO:0046983
Ssu1g1534 527 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 518 IPR044658 -
Ssu1g1534 527 Coils Coil 340 360 - -
Ssu1g1534 527 MobiDBLite consensus disorder prediction 160 183 - -
Ssu1g1534 527 Gene3D - 333 409 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1534 Ssu-Chr1 36458447 36462575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1534 15 520 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 42.751 5.58e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu1g1534 HLH 7.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1534 - - gmx:100807098 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1534 1 36458447 36462575 Ssu1g1534 1 36458447 36462575 ECH
Ssu6g0646 6 10037407 10046773 Ssu1g1534 1 36458447 36462575 PCT