Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1528 ATGGGGGTGGTTTTGGCACTGATTCTGCAACTGATGAAGCTCTGCATCATTGGCTTTGTTGTGGCATTCCAAGCATCTCAAGGGTCTGTTATATCCCAATCTCCAGCATTCCTTCCAGTCATTCATCCTAGTGGAGAAGCACCTGGTCCTATCCATCATGGACTATCATGGGGAAGCAGTCCACCAAACTCACCTTCAGATCCAAATGGGTTTGTTATACCCCCATCTCCATTAATAACACCTGTGGATCCTTCCCCCAGTGAAGCACCTGGTGTTTCACACCCAAGAGAACCATGGAGAACCATTGCGCCAAGCTTTCCAGATGTACCAAATGGTTCATTCTTGCACGCTCCAGTTACATTACCATCTCCTACATCAGCTCCAGCTCCTGAGaagttaaaagaatttgaacCATCTAAATCTCCTAGTCCTAGTACAAGCACCATAACATCATCACCGCCATATAATCCTGCTCCTGCACCATCAACTGCTGAAGGGAATGTGCCACCATCCATTCAACCAAATCCACCTCAAAGCAAAACACCTGCTGTTAGGCCTCCTGTATCCACACCAATTGCTCCAGCTCCCTTTGCAATCCCTTCTGCCAATTTGCCAAAAACTTCACCAGTCAGCCAGCCAATTGAACATGGAAGTTTGCCTCCTAAGATTGATGAGAGGAATGAAAGTAAGAGTCACAAGCCAGAGCCAGCTTTGCCAGCCCTAGTTCCAATACCTTCTACCAAATTGCCCAAAATTTCACCAGTACGCCAACCAACTAAAAATGGAAGTTTGCCTCATAGAGAGGGTGCAAATAAAGGTCACGTCCCAGAGCCAATTTCACCAGCCCCTATAGTATTCAGTTTGCCCGAACATTCGCCAGTGAGTCAGCCAACTGAACATGAAATTTTGCCTCCAACTGTTCCCAGAAGGAATGTCAACACTGGTCACACATTGGAGCCAGTTTCACAAGCCCCAGTTGCAATACCTCCTGCAAATTTGCCAATAAATTCATCAGTCGGTCAACCAACTCATCATGGAAATTTCCCACCTGATCTTCACAATAGGACTGCAAATAATGATCATACTCACACCCCAGAACCAGAAACACCACCATCAGTTAGACCACCAAGTCCATTTTCAGTAGACCCACCATTGGTCCACCCAGTCATACCAGCAGCAACTCCACCCAAAGTACCAGCACCTCTTGTCTCTCCTGCATTGACTCCTTCCAGAAGCTTCAATTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCTGTGTACAAAACACCAAAGCCACTACCGGCTATAGTACATTCCCATGCTCAAGCACCTGTTGTCTCTCCTGCATTAACACCTTCCAGAAGCTTCAATTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCTCCATACAAAACACCAAAGCCACTGCCAGCTATAGTACATTCCCCTGCTCAAGCTCCTCCTTCAGCACATAAAGGAAGGCAATTTCACCATGCTCCTGAGCCACTTATTTCATCTCCTAAATCTCCTTTCAACAAAGAAGGTCATTCTCCTGCATCTTCACCTTCAGCCACATTTTATAAGCATCACCATACAAGGAACACAATCATCAGCCCTGCTCCTGCATCATCATATTCGGTTTCTCCTTCCTCTTCAAAACACCAAGATGAACCATTTCCTTCCTCAATGCCAACAAGTAGACCAAGACATCATTCTCCACCACCAATGAACACAGGTTCCTCAGTCTCCCCATTTGCCTTCCCTGTTCAGTCACCAGTGAACCAGGTTTCACCTGCTCCTTCTCCATCATTCAAAATACCTCCCCACTCAACCAAAATTCCATTTCATCCTCCTAAAGTATCTCCTTCTCGGCCTTCTTCCAAGAGCCCTAAGAAGCCAGTCCTGCCTCATGTTCAAGCACTGCCACCCCCTCCTCCCAATGAAGatTGTATATCACTGGTTTGCTCAGATCCCTATACAAATTCTCCACCTGGAGCACCTTGCAAATGTGGCTGGCCCATGAAAGTCGGTCTTCGCCTTAGTGTTTCTCTGTATACTTTCTTCCCTTTGGTTTCAGAGTTTGCTTCTGAAATTGCCACCGGGGTTTTCATGAAGCAAAGTCAAGTTCGCATTATGGGAGCCGATGCAGCAAACCAGCAACCAGATAAATCTATTGTATTCATTGATTTGGTACCACTTGGGGAAGAATTTGATAACACTACAGCCTTTTTAACTTCTGAGAGATTTTGGCATAAACAAGTTGTTATAAAGACTTCTTACTTTGGTGATTATGACGTGTTATATGTGACCTATCCagGTTTGCCTCCATCTCCTCCGTTACCTCCTTCTAGCATTACCATGATCGATGGTGGTCCATATTCGAGTGGTGGCAATAATGGTAGGACAATAAAGCCCCTTGGGGTTGACATACCAAAGAGGCAGCATAAAGGTGGACTTAGCAAGGGCATAATTGCTATTATTGCTCTTTCAGTTTTTCTAGTAGTTGTTTTATGCTCTGCTGCTGCTTGGGCATTGTTCAAGTTCAGAGATCATGTGAGTCAACCACCATCAACCCCACGGGTTTTGCCTCCTCCTCTTACCAAAACACCAGTTGGTGGTGGGCTTGCTTCAGCTTCGACATCATTTCGATCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTTTAGCATGAATGACATTGAGAAAGCTACGGGTAATTTCCATGCTTCTAGAGTACTTGGAGAAGGTGGTTTTGGGCTTGTTTATAGTGGTATACTTGAAGATGGGACAAAAGTGGCAGTCAAGGTTCTAAAAAGAGAGGATCATCATGGAGATCGTGAATTCCTATCTGAAGTTGAGATGCTTAGCCGCCTTCACCATAGAAACTTGGTTAAGTTGATTGGTATATGCACAGAGGTCAGCTTCCGCTGCCTGGTTTATGAACTCATTCCAAATGGCAGCGTGGAATCCCATTTACATGGAGTTGACAAGGAAAACAGCCCACTTGATTGGAGTGCTCGGATAAAGATAGCCCTTGGTGCTGCTCGTGGACTGGCTTATCTGCATGAAGATTCAAGTCCCCATGTCATACATAGGGACTTCAAGTCTAGCAATATCTTGCTGGAAGATGATTTTACACCAAAAGTATCTGATTTTGGATTGGCCCGAACAGCAGCTGATGAGGAGAACAGACACATATCAACACGTGTCATGGGAACTTTTGGTTATGTGGCTCCGGAGTATGCAATGACTGGGCATCTTCTTGTGAAGAGTGATGTTTACAGCTATGGTGTTGTCCTCCTTGAGCTTTTCACTGGAAGAAAACCGGTAGACATGTCACGACCTCCCGGTCAAGAGAATCTCGTTGCGTGGGCTCGTCCACTACTCTCAAGCAAGAAGGATTGGAAGCAATAA 3417 0.4524 MGVVLALILQLMKLCIIGFVVAFQASQGSVISQSPAFLPVIHPSGEAPGPIHHGLSWGSSPPNSPSDPNGFVIPPSPLITPVDPSPSEAPGVSHPREPWRTIAPSFPDVPNGSFLHAPVTLPSPTSAPAPEKLKEFEPSKSPSPSTSTITSSPPYNPAPAPSTAEGNVPPSIQPNPPQSKTPAVRPPVSTPIAPAPFAIPSANLPKTSPVSQPIEHGSLPPKIDERNESKSHKPEPALPALVPIPSTKLPKISPVRQPTKNGSLPHREGANKGHVPEPISPAPIVFSLPEHSPVSQPTEHEILPPTVPRRNVNTGHTLEPVSQAPVAIPPANLPINSSVGQPTHHGNFPPDLHNRTANNDHTHTPEPETPPSVRPPSPFSVDPPLVHPVIPAATPPKVPAPLVSPALTPSRSFNWKKGGEPVSAPVYKTPKPLPAIVHSHAQAPVVSPALTPSRSFNWKKGGEPVSAPPYKTPKPLPAIVHSPAQAPPSAHKGRQFHHAPEPLISSPKSPFNKEGHSPASSPSATFYKHHHTRNTIISPAPASSYSVSPSSSKHQDEPFPSSMPTSRPRHHSPPPMNTGSSVSPFAFPVQSPVNQVSPAPSPSFKIPPHSTKIPFHPPKVSPSRPSSKSPKKPVLPHVQALPPPPPNEDCISLVCSDPYTNSPPGAPCKCGWPMKVGLRLSVSLYTFFPLVSEFASEIATGVFMKQSQVRIMGADAANQQPDKSIVFIDLVPLGEEFDNTTAFLTSERFWHKQVVIKTSYFGDYDVLYVTYPGLPPSPPLPPSSITMIDGGPYSSGGNNGRTIKPLGVDIPKRQHKGGLSKGIIAIIALSVFLVVVLCSAAAWALFKFRDHVSQPPSTPRVLPPPLTKTPVGGGLASASTSFRSSIAAYTGSAKTFSMNDIEKATGNFHASRVLGEGGFGLVYSGILEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICTEVSFRCLVYELIPNGSVESHLHGVDKENSPLDWSARIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARTAADEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELFTGRKPVDMSRPPGQENLVAWARPLLSSKKDWKQ 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1528 1138 Gene3D Transferase(Phosphotransferase) domain 1 984 1137 - -
Ssu1g1528 1138 Gene3D Phosphorylase Kinase; domain 1 880 983 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 601 624 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 67 84 - -
Ssu1g1528 1138 CDD STKc_IRAK 914 1131 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 219 233 - -
Ssu1g1528 1138 Pfam Protein tyrosine and serine/threonine kinase 910 1112 IPR001245 GO:0004672|GO:0006468
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 368 388 - -
Ssu1g1528 1138 PANTHER OS01G0750732 PROTEIN 464 1135 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 139 153 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 468 482 - -
Ssu1g1528 1138 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 464 1135 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 510 600 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 154 194 - -
Ssu1g1528 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1030 1042 IPR008271 GO:0004672|GO:0006468
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 457 637 - -
Ssu1g1528 1138 MobiDBLite consensus disorder prediction 49 388 - -
Ssu1g1528 1138 ProSiteProfiles Protein kinase domain profile. 908 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1528 1138 SUPERFAMILY Protein kinase-like (PK-like) 888 1130 IPR011009 -
Ssu1g1528 1138 ProSitePatterns Protein kinases ATP-binding region signature. 914 936 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1528 Ssu-Chr1 35973986 35982720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1528 355 1134 Receptor kinase-like Gene Family AT5G56890 54.342 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu1g1528 PK_Tyr_Ser-Thr 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1528 - - ccaj:109805519 1802.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1528 1 35973986 35982720 Ssu1g1528 1 35973986 35982720 ECH