Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1518 ATGCCTCGCCGAGTACTCCAAGAAGCTGCTTCACCCTCTAATGCGTCACAGACGCCACAGCACAAATCTGGAGCCTTGTTTTACATCCTCGGAGTAATAGTTGTGCTCACCATAgtgttgattattttatatgtattttggAAGCGTATTAAACGGCCAGCACAGACGACGAAAGTTGCAACTAAAGAGCAGCAAGTGTTTGGGAAGCATAATGAATCAGCAGAGGTGATGAAGAAGATATTTCCGCCTAAACAACAGTCAGGGTCCATGGAGTTCTTTAGTGGTAACCTTCGGACAATAAGCTGCTTTGACTACCAGACATTAAAGAAAGCAACCAAGAATTTTTGTCCTGATAATCTTCTTGGAAGTGGTGGATTTGGACCTGTTTACCAGGGAAAATTGGTAGATGGAAAGCTAATTGCTGTTAAGAAATTGTCTCTCAACAAATCCCAACAGGGAGAAAAAGAATTTCTGGTGGAGGTGAGAACGATCACTAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGCTGCATAGATGGGCCTCAAAGGATAATTGTCTATGAGTACATGAAGAACAGAAGTTTGGACCTCTTCATACATGGAAACAGTGATCAATTTCTGAATTGGAGCTCTAGGTTCCAAATTATTCTTGGAGTAGCGCGAGGACTACAATACCTTCATGAGGATTCACACCAAAGAATTGTTCACCGAGACATCAAAGCAAGCAACATTCTTCTTGACGACAAGTTTCAGCCAAGGATTGGAGACTTTGGGCTAGCTAGATTTTTCCCTGAAGACCAAGCCTATCTTAGCACACAGTTCGCTGGAACATTAGGTTATACAGCTCCTGAATATGCTATTAGAGGAGAATTGTCGGAAAAGGCAGATATCTATAGTTTTGGAGTTCTCGTGCTTGAAATAATCTGCTGCAGGAAAAACACAGAGCATACTTTGCCATCGGAAATGCAGTACCTCCCTGAATACGCCTGGAAACTGTACGAGAATGCAAGGATATTGGATATTGTGGATCCAAAGCTGCGACAACATGGATTCGTAGAAAAGGATGTTATGCAAGCAATCCACGTGGCTTTCTTATGTCTTCAGCCTCATGCACATTTGAGACCTCCCATGTCAGAGATCGTGGCATTGTTGACATTCAAAATTGAAATGGTTACAACACCAATGAGGCCAGCCTTCCTCGATCGAAGGCCAAGAAAGGATGATGAGAACCATTCTATGGAAGCATTATCTCAGGGTTTCACATCTCCCATACATGGTCCAGTATTCCGGGTTCCCTACCTATAA 1311 0.4241 MPRRVLQEAASPSNASQTPQHKSGALFYILGVIVVLTIVLIILYVFWKRIKRPAQTTKVATKEQQVFGKHNESAEVMKKIFPPKQQSGSMEFFSGNLRTISCFDYQTLKKATKNFCPDNLLGSGGFGPVYQGKLVDGKLIAVKKLSLNKSQQGEKEFLVEVRTITSIQHKNLVRLLGCCIDGPQRIIVYEYMKNRSLDLFIHGNSDQFLNWSSRFQIILGVARGLQYLHEDSHQRIVHRDIKASNILLDDKFQPRIGDFGLARFFPEDQAYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLVLEIICCRKNTEHTLPSEMQYLPEYAWKLYENARILDIVDPKLRQHGFVEKDVMQAIHVAFLCLQPHAHLRPPMSEIVALLTFKIEMVTTPMRPAFLDRRPRKDDENHSMEALSQGFTSPIHGPVFRVPYL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1518 436 ProSiteProfiles Protein kinase domain profile. 115 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1518 436 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g1518 436 Gene3D Transferase(Phosphotransferase) domain 1 192 395 - -
Ssu1g1518 436 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 94 401 - -
Ssu1g1518 436 SMART serkin_6 115 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1518 436 Pfam Protein tyrosine and serine/threonine kinase 119 384 IPR001245 GO:0004672|GO:0006468
Ssu1g1518 436 PANTHER RECEPTOR-LIKE KINASE 94 401 - -
Ssu1g1518 436 SUPERFAMILY Protein kinase-like (PK-like) 93 389 IPR011009 -
Ssu1g1518 436 Gene3D Phosphorylase Kinase; domain 1 73 191 - -
Ssu1g1518 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Ssu1g1518 436 CDD STKc_IRAK 121 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1518 Ssu-Chr1 35746100 35750174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1518 103 402 Receptor kinase-like Gene Family AT1G56120 47.667 4.71e-98 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu1g1518 PK_Tyr_Ser-Thr 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1518 - - gmx:100799624 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0668 6 10391603 10395845 Ssu1g1518 1 35746100 35750174 PCT