Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1517 ATGGAAGATGATGAGGCATGCATCACGGGTCTAAGCCTTGGACTTGGAATAGGAGGAGGGCGTGTGCCAAAGAAGGAGAAGCAGAAAGTGCCTTGCTTGGACCTAACGTTTGAGCTTTGTCCTAAAGGGGAAGCCATTGACGTGGATCAACATCATGATGAGGCAAAAGGGTTATGTTTGAAGCACCCAATTGAAAAGAGTCCTGATAGCAACAATAGCAGTAACGGCAGCAGAAAGAAACTGAAGCTTACAAGGGAGCAATCAGCCACGCTTGAGGACATCTTCAAGCTTCACAGCACCCTTAACCCCGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGGCAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACCAAGCTGAAACAAACAGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACCGATGAAAACCTAAGGCTGAAGAAGGAATTGCAAGAGCTGCGTGCACAAAAGATTGGATCAACACCACTATACATTCAACTCTCCAAGGCTACAGCCTTGACCATTTGTTCATCGTGCGGGGAACTATTGAAGCCCAgcgaaggaaaaaaaaaagccattTCCGATGTGGTCCGAAACAGCAGCCACAAATTGCAGAGCAGCATAGCGTTAGAGGGTATCTAG 675 0.4519 MEDDEACITGLSLGLGIGGGRVPKKEKQKVPCLDLTFELCPKGEAIDVDQHHDEAKGLCLKHPIEKSPDSNNSSNGSRKKLKLTREQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGSTPLYIQLSKATALTICSSCGELLKPSEGKKKAISDVVRNSSHKLQSSIALEGI 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1517 224 Pfam Homeobox associated leucine zipper 134 167 IPR003106 GO:0006355|GO:0043565
Ssu1g1517 224 CDD homeodomain 78 135 IPR001356 GO:0003677
Ssu1g1517 224 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Ssu1g1517 224 Coils Coil 133 167 - -
Ssu1g1517 224 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Ssu1g1517 224 SMART halz 134 177 IPR003106 GO:0006355|GO:0043565
Ssu1g1517 224 MobiDBLite consensus disorder prediction 62 83 - -
Ssu1g1517 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9-LIKE 9 194 - -
Ssu1g1517 224 Gene3D - 69 139 - -
Ssu1g1517 224 SMART HOX_1 76 138 IPR001356 GO:0003677
Ssu1g1517 224 Pfam Homeodomain 78 132 IPR001356 GO:0003677
Ssu1g1517 224 PANTHER - 9 194 - -
Ssu1g1517 224 SUPERFAMILY Homeodomain-like 66 135 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1517 Ssu-Chr1 35693976 35695158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1517 77 193 Homeobox Transcription Factor Family AT4G37790 74.359 2.97e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g1517 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1517 K09338 - gmx:100790522 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0670 6 10440322 10441591 Ssu1g1517 1 35693976 35695158 PCT