Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1512 ATGACAGTGAATATGATAGACGTTGTTCCCAGAACGAGGATGGAGGAACAGATAGCAATACAAGAAGCAGCTTCTGCGGGGTTAAAGAGCATGGAGCATCTCGTACGACTCCTCTCTCCCTCTTCTtgcaattcttcttcttctcttaacaacaacaacaacaacctcgACTGCTCCGAAATCACCGACTTCACCGTCTCCAAGTTCAAACAGGTCATCAGCCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCGCACCGGTCCAAGCCCAAGGCCAAGCCCAAGCCCAAGGCCAAGCCCAACCACAACCTCAACCTCAACCTCAACCTCAGCCTCGGCCTCAAACCCAAGGCTTCACTTTAGATTTCATTAAACCCACCATTCTCAACTCTAAGCCCAATAACAAAGACGAAACTCTCACTCTTTCCACCACCTCCTCCTCGTTCTTGTCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGCCCCTTCCTCCTTCCCTCCGCCGCCAAACCCCCTCTCTCCTCCTCTCACCGGAAAAAGTGCCGCGACGCCGCCCTCTCCGCCAAACACTCCTGCCACTGCTCTAAGAAAAGGAAATCACGTGTGAAACGAACGATCCGCGTGCCGGCGATAAGCTCGAAGATCGCCGATATCCCGCCGGACGAGAACTCATGGAGAAAGTACGGTCAAAAACCGATCAAGGGTTCACCTTACCCTAGAGGGTACTACAAATGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCGCAAGATGACCCCAAGATGCTGATAGTGACGTACGAGGGTGAGCACGGTCATGCGCTGCCGTTGACCGTCGCTGCCGGTGTTGGTTACGGCCTTCAGTCCAGTTAG 900 0.5344 MTVNMIDVVPRTRMEEQIAIQEAASAGLKSMEHLVRLLSPSSCNSSSSLNNNNNNLDCSEITDFTVSKFKQVISLLNRTGHARFRRAPVQAQGQAQAQGQAQPQPQPQPQPQPRPQTQGFTLDFIKPTILNSKPNNKDETLTLSTTSSSFLSSVTNDASVSDGKIGPFLLPSAAKPPLSSSHRKKCRDAALSAKHSCHCSKKRKSRVKRTIRVPAISSKIADIPPDENSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHGHALPLTVAAGVGYGLQSS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1512 299 Pfam Plant zinc cluster domain 183 222 IPR018872 -
Ssu1g1512 299 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1512 299 Gene3D WRKY domain 208 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1512 299 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 10 289 - -
Ssu1g1512 299 SUPERFAMILY WRKY DNA-binding domain 222 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1512 299 MobiDBLite consensus disorder prediction 87 119 - -
Ssu1g1512 299 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 289 IPR044810 GO:0003700
Ssu1g1512 299 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1512 299 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1512 Ssu-Chr1 35581416 35583112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1512 6 282 WRKY Transcription Factor Family AT2G24570 52.597 1.85e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g1512 WRKY 1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1512 - - gmx:100127391 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1512 1 35581416 35583112 Ssu1g1512 1 35581416 35583112 ECH
Ssu6g0678 6 10534589 10535843 Ssu1g1512 1 35581416 35583112 PCT