Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1506 ATGAGTTTCCCGAATGGTTCTTCGCCGCGGCGGCAGGCGGCGGAGGGTGACATAGAGGCTGGTCCGTCGACCCGCCGCTCCGCCGACCTCGACGACGGGGATTCCTCCGATCCGTTTGATATCGCCAGAACCAAGAACGCTTCCATCGAACGCCTCAGGCGCTGGAGGcaagcGGCGCTTGTGCTTAATGCTTCTCGTCGATTTCGTTATACCTTGGacttgaaaaaagaagaagagaagaagcaAATATTGAGAAAGATTAGAGCTCATGCACAAGCCATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGGGCCAGGGAGTGAACCTATTAAACCTCCTCCGACACCCACTCTTGGTGAATTTCAAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGACCCTGCTGCTCTGCAGCAAAATGGAGGGGTTGTAGGACTATCAAATTTGTTGAAAACCAATTTAGAGAAGGGGATTCATGGTGATGATGCTGACTTACTAAAACGAAGGAATGCATTTGGTTCCAATAATTATCCTCGGAAGAAGGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGACCTGACcttgattattttaatgatagCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGcagttattattgttattgttgttacaGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACctaaatgaagagaagagaaatatacACCTGGAGGTTATTAGAGGTGGTAGAAGGGTTGAGATCTCTATATATGATATTGTTGTTGGGGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCACTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACAGGGGAGAGCAAAACTGTCCATAAGGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAGGTTGCAGATGGCAGTGGCACTATGTTGGTCACTGGTGTTGGTATAAATACTGAATGGGGGCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTAGCTACTTTCATTGGTATTGTTGGACTCTCTGTTGCTGTTATCGTCCTGATTGTGCTACTGGCCAGATACTTTTCTGGGCATACTGAAAACACAGATGGGACGGCTCAATTTCAAAGAGGCCAGACTAAAGTTGGTGATGCTATTGATGATGCAATTAAGATAGTAACTGTTGCGGTTACCATTGTAGTGGTTGCAGTACCTGAGGGGCTCCCATTAGCAGTTACCTTGACGCTGGCCTACTCGATGAGAAAAATGATGGTAGATAAAGCTTTGGTAAGAAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCCACAACCATATGCAGTGATAAGACTGGCACATTGACTATGAATAAGATGACTGTGGTTGAGGCTTACGCGGGGGGTAATAAAATTGATCCTCCTCACAAGTTGGAGTCCTATCCTATGCTTTGCTCTCTGCTCATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTTTATGCACCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCACCGACAGAAAAGGCAATTTTACTTTGGGGAATACAGCTTGGGATGAATTTTACGGCTGCTCGATCTGAATCGTCAATTATTCATGTTTTTCCATTCAATTCAGAGAAAAAAAGAGGCGGAGTTGCAATACAAACGGCTGACTCTGACATCCATATACACTGGAAAGGCGCTGCTGAGATAGTCCTAGCCTGCTGTACAGGGTATATTGATGCAAATGACCAGCTGGTGGGGATGGATGAGGAGAAGATGACATTTTTCAAAAACGCTATTGAAGACATGGCTTCTGATAGTCTTCGTTGTGTTGCTATTGCATATAGATCATATGAAAAGGAGAAAGTTCCAACTAATGAAGAACTACTTGCTCACTGGTCTTTACCAGAGGATGATCTTATTTTACTAGCTATTGTTGGTCTTAAGGATCCTTGTCGAGAAGGTGTCAAAGATGCAGTGCAACTTTGCCAAAAAGCTGGGGTTAAGGTAAAAATGGTCACTGGTGACAATGTGAAAACTGCAAAGGCAATTGCTGTGGAATGTGGAATACTTAGTTCATTTGCTGATGCTACGGAGCCAAACCTCATTGAAGGAAAAACATTTCGTGGCTTGTCAGATGCAGAGAGAGATGAAATTGCTGATAGGATATCGGTCATGGGACGGTCATCTCCCAATGACAAACTACTGCTAGTACAAGCATTGAGGAGGAAGGATCATGTTGTGGCTGTAACTGGGGACGGAACAAATGATGCTCCTGCACTTCATGAGGCCGATATAGGGCTTGCAATGGGTATCCAAGGTACAGAAGTTGCCAAAGAGAGCTCCGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATGCAGTTTCAGCTTACAGTAAATGTTGCTGCTCTAGTGATAAATGTTGTTGCTGCATTTTCATCTGGTGATGTCCCATTAAATACAGTGCAGCTTCTCTGGGTGAATCTTATCATGGATACTCTGGGAGCACTGGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATAGATCTCCAGTGGGGCGAAgAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTGTCTGTCTTGCTTGTACTCAATTTCCGAGGTAGAAGCATACTGGGTCTGAGCCATGACAAAAATGATCATGCAATCAAAGTGAAGAACACTTTGATATTCAATGCATTTGTTCTCTGTCAAGtctttaatgaatttaatgcaCGGAAGCCAGATGAATACAACATATTTAAAGGAGTCACGAAAAACTACCTCTTCATGGGTATAATTGTATTAACTGTTGTGCTTCAGATTGTCATCATTGAATTTCTTGGGAAGTTTACTTCAACAGTGAGGCTTAATTGGAAGCAGTGGCTCATCTCTGTCGTTATTGGGATCATTAGTTGGCCTCTTGCTGCGATTGGGAAATTGATACCAGTGCCGACAACTCCCATCAATAACGTTTTCTCAAAATGTCGAACTTCTAGAAGGAAGGAACCTGAGGAATCTCAATAG 3252 0.4231 MSFPNGSSPRRQAAEGDIEAGPSTRRSADLDDGDSSDPFDIARTKNASIERLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGGPGSEPIKPPPTPTLGEFQIGQEQLASISREHDPAALQQNGGVVGLSNLLKTNLEKGIHGDDADLLKRRNAFGSNNYPRKKGRSFLMFMWDACKDLTLIILMIAAAASLALGIKSEGIKEGWYDGGSIAFAVIIVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVIRGGRRVEISIYDIVVGDVIPLNIGNQVPADGILITGHSLAIDESSMTGESKTVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVIVLIVLLARYFSGHTENTDGTAQFQRGQTKVGDAIDDAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMVDKALVRRLSACETMGSATTICSDKTGTLTMNKMTVVEAYAGGNKIDPPHKLESYPMLCSLLIEGVAQNTNGSVYAPEGANDVEVSGSPTEKAILLWGIQLGMNFTAARSESSIIHVFPFNSEKKRGGVAIQTADSDIHIHWKGAAEIVLACCTGYIDANDQLVGMDEEKMTFFKNAIEDMASDSLRCVAIAYRSYEKEKVPTNEELLAHWSLPEDDLILLAIVGLKDPCREGVKDAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILSSFADATEPNLIEGKTFRGLSDAERDEIADRISVMGRSSPNDKLLLVQALRRKDHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFMQFQLTVNVAALVINVVAAFSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAMYQVSVLLVLNFRGRSILGLSHDKNDHAIKVKNTLIFNAFVLCQVFNEFNARKPDEYNIFKGVTKNYLFMGIIVLTVVLQIVIIEFLGKFTSTVRLNWKQWLISVVIGIISWPLAAIGKLIPVPTTPINNVFSKCRTSRRKEPEESQ 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1506 1083 Pfam E1-E2 ATPase 266 466 - -
Ssu1g1506 1083 PANTHER CALCIUM-TRANSPORTING ATPASE 24 1073 - -
Ssu1g1506 1083 MobiDBLite consensus disorder prediction 1 42 - -
Ssu1g1506 1083 SFLD C1.7: P-type atpase like 470 847 - -
Ssu1g1506 1083 PRINTS Sodium/potassium-transporting ATPase signature 231 251 - -
Ssu1g1506 1083 PRINTS Sodium/potassium-transporting ATPase signature 481 502 - -
Ssu1g1506 1083 PRINTS Sodium/potassium-transporting ATPase signature 606 624 - -
Ssu1g1506 1083 Pfam Cation transporting ATPase, C-terminus 880 1057 IPR006068 -
Ssu1g1506 1083 SUPERFAMILY Calcium ATPase, transduction domain A 266 361 IPR008250 -
Ssu1g1506 1083 SUPERFAMILY Calcium ATPase, transmembrane domain M 147 1059 IPR023298 -
Ssu1g1506 1083 Gene3D - 485 840 IPR023214 -
Ssu1g1506 1083 PRINTS P-type cation-transporting ATPase superfamily signature 688 699 - -
Ssu1g1506 1083 PRINTS P-type cation-transporting ATPase superfamily signature 710 720 - -
Ssu1g1506 1083 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Ssu1g1506 1083 PRINTS P-type cation-transporting ATPase superfamily signature 312 326 - -
Ssu1g1506 1083 PRINTS P-type cation-transporting ATPase superfamily signature 795 814 - -
Ssu1g1506 1083 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Ssu1g1506 1083 SUPERFAMILY HAD-like 486 900 IPR036412 -
Ssu1g1506 1083 Gene3D - 498 695 IPR023299 GO:0000166
Ssu1g1506 1083 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 700 IPR023299 GO:0000166
Ssu1g1506 1083 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 762 875 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1506 1083 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 428 511 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1506 1083 Pfam Cation transporter/ATPase, N-terminus 145 213 IPR004014 -
Ssu1g1506 1083 CDD P-type_ATPase_Ca_PMCA-like 170 928 - -
Ssu1g1506 1083 Gene3D - 169 364 - -
Ssu1g1506 1083 Gene3D - 196 1055 - -
Ssu1g1506 1083 SFLD p-type atpase 470 847 IPR044492 -
Ssu1g1506 1083 MobiDBLite consensus disorder prediction 22 42 - -
Ssu1g1506 1083 Pfam haloacid dehalogenase-like hydrolase 485 809 - -
Ssu1g1506 1083 Gene3D - 47 102 - -
Ssu1g1506 1083 PANTHER CATION TRANSPORTING ATPASE 24 1073 - -
Ssu1g1506 1083 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 137 1059 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu1g1506 1083 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Ssu1g1506 1083 Pfam Ca2+-ATPase N terminal autoinhibitory domain 36 79 IPR024750 GO:0005516
Ssu1g1506 1083 SMART Cation_ATPase_N_a_2 147 218 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1506 Ssu-Chr1 35415507 35449137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1506 7 1066 Primary Pumps ATPases AT5G57110 75.235 0.0 1614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1506 K01537 - gmx:100792945 1898.63