Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1498 ATGACGGAGCAAACGAAGTTCAGCGTGTTGTGCAGCCTGTACACGTGGACGCAGCGAAGCAAGTCGTCGGCGAAGAAGCGCGCCAAGTTCCGCAAGTTTCTCGACGCCTTCTGCACCGACCGCAACTTCTTCCCCGCCATTCGCCTCATCCTTCCCAGCCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCATCGCCCGCGACTCCCCCGACGCCCTCCGCCTCGTCAATTGGCGCAAGGGCGGCGCCGCCACCGGTGCCACCGCCGGAAATTTCGCCCTCGTCGCCGCCGAGGTGCTGCAGCGTAGGCAAGGGACGGCTTCGGGTGGATTGACGATAGGGGAGCTGAATGAGTTGCTTGACCGGTTGTCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGTGATCGCATtcaaatccataaaaatggAACTGAGATACATTTCTTTTCAAGGAACTTTATTGATCATTCTGAATATACTCATGCAATGTTGGAAATCATAATTCAAAATGTTCTTGTAGATAGGTGCATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTTGAAACGTTTTGCCGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGATAAACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACCAGTGTGATTCACCAAACTTTGAAGGAACGACATGagattttgcataaaattgtAAGGCCAATGAAGGGTTGTTTGGAAATTTTAGTACCTAATGGTGGTATCAACAGTCATCTTTCTTCTGGTGAACCTTGTTGGTCATTTATTGCTCATAACGTGGATGAAGTTGAGAGGTTTTTCAAAGAAACCATTGAAAATAGAGACGAGGGAATTGTTTTAAAAGACTGTAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGACCTGGATGTACTTATAATAGGTGGCTACTATGGCTCAGGACGACGTGGAGGAGAGgttGCTCAATTCTTGGTTGGCCTTGCAGAGCGTCCATCCCCAAATACACACCCTAAGCAATTTATCTCCTTTTGCAGAGTTGGTACTGGACTCTCTGATGATGAGCTTGATGCTGTAGTAACCAAACTAAAACCTTACTTTAGAAAGTACGAATATCCAAAGAAGGGGCCGCCAAGTTTTTATCAAGTAACTAACCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTATAGTCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGTATGAATGCCTTGATGTTCAATCATTTATAGAACTAGTACAGTCTAGCAATGGTACCACACAGAGGGATACAAAATATGGCAGCAAGCAGGACAGTAAACCAAAACGAACGAAATCCTTCACTatgggagaaaagaaaaagatgtccATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCAAGTGTTAAGGGGGGTtccttaatattttcaaatatgatGTTCTACTTTGTTAATGTGCCTCCATCTCATTCTCTCGAGTCCTTGCACAAAATTATTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAATAACTCAGTCACGCATTGTGTTGCAGCAGACAGCAAGgGGTTTAAATTCGAAGCAGCAAAACGTCATGGTGATATCATTCATTATTCTTGGGTATTAGATTGTTTAGCACAAAAGAAGCTTGTCTGCTTACAGCCGAAGTACTTCCTCTTCCTATCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGGATCTTGATCTTGGAGACATCAAGCAACTCTTAAGCAATATTCATAGGTCAGAAGATGTCAGCACCGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTATGTAATGGATGCTCCATTTATTTCCACACTGCAATACCTTCCTTGAAAGGAGATTGGCATTTTATATCGCAACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTGATCTTACTAGTGCAACCCATTTAGTGGCGTTGCTTGTGCCAGGATGTCAGACTGACTTTGAAGAAATAGAGAGTAGTTTCACTtcagttgaaagaaaaattctcCGAAGCAAGAGGTTGCATGTAGTTAAATCCCAGTGGTTAGAAGATTGTTTAAACAGTAGCCGAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACAGGACTTGGCGTTAGAGGCTCATCTGAGTGGAGATAATGTAGAAGAccaaaatatttctttctctgACAAGGGAAATCAACAGAGAAGTGCAAAAGCTGCGTGTGAAGACAGTATGGCTTTGGTATCCCAAGAGAAGGGTGGccaaagaaaaagaggaagaccTGCAGGCAGTGGTATCAAAAAAGCAAAACCAGCTGGCAAACAAGCTCGAAGAGCTCGAGCACAAATTGTGAAAAAGCCTGCTAAAATATGTGAATATGAATCATCAGATGAAAGTGATTCTCGGGACAAACGACCAATTGAGCAGGAGATTGACACTAGAGCAGGAAGTCTAGATTTTTACAAGAAACATTCAGAACCCCAGGAGACTGATGAACGAGAAAATGTCCAAGTTGCTGACACAGTGGAAAGTTCTGAACAAAATAAGGTAGACAAGCAAGAGATCTTGAAGGACAATGAACATGAAAGAATGTTGTTGGTTCCTGAAATAGAAATGACTGATAGGCACAATGACCAAAACACGGAGGTGACTGAGAAACTTGAAATTTCTGCTGACCCCCTGCAGGCGATGTTATTTGACATGATTCCTAGCCTTGCCACCAAAAAAGATGAGCAACCTATGAATCGTAGTTTTAGAGAAGAGAAGCTACCTGAAATCTCCAATGCAGAAGCAGAGCCTACAactacaaagaaaaagaaagttagCTACAAGGATGTTGCTAGTCAGCTGCTGAAGGACTGGTAG 3516 0.4133 MTEQTKFSVLCSLYTWTQRSKSSAKKRAKFRKFLDAFCTDRNFFPAIRLILPSLDRERGSYGLKESVLATSLIDALGIARDSPDALRLVNWRKGGAATGATAGNFALVAAEVLQRRQGTASGGLTIGELNELLDRLSSGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYTHAMLEIIIQNVLVDRCILDGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDKQLCYVAFDILYFGDTSVIHQTLKERHEILHKIVRPMKGCLEILVPNGGINSHLSSGEPCWSFIAHNVDEVERFFKETIENRDEGIVLKDCSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKQFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKGPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVQSSNGTTQRDTKYGSKQDSKPKRTKSFTMGEKKKMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCLAQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLDLGDIKQLLSNIHRSEDVSTVDHYRKKYCPKDKWSLCNGCSIYFHTAIPSLKGDWHFISQLALRRFKLEVLMGGGKVTSDLTSATHLVALLVPGCQTDFEEIESSFTSVERKILRSKRLHVVKSQWLEDCLNSSRRLPEDSYSLKPWGIEESTAEDCEQDLALEAHLSGDNVEDQNISFSDKGNQQRSAKAACEDSMALVSQEKGGQRKRGRPAGSGIKKAKPAGKQARRARAQIVKKPAKICEYESSDESDSRDKRPIEQEIDTRAGSLDFYKKHSEPQETDERENVQVADTVESSEQNKVDKQEILKDNEHERMLLVPEIEMTDRHNDQNTEVTEKLEISADPLQAMLFDMIPSLATKKDEQPMNRSFREEKLPEISNAEAEPTTTKKKKVSYKDVASQLLKDW 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1498 1171 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Ssu1g1498 1171 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Ssu1g1498 1171 PANTHER DNA LIGASE 4 2 910 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Ssu1g1498 1171 Gene3D - 444 605 IPR012340 -
Ssu1g1498 1171 MobiDBLite consensus disorder prediction 605 627 - -
Ssu1g1498 1171 ProSiteProfiles BRCT domain profile. 839 909 IPR001357 -
Ssu1g1498 1171 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu1g1498 1171 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu1g1498 1171 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Ssu1g1498 1171 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Ssu1g1498 1171 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Ssu1g1498 1171 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Ssu1g1498 1171 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Ssu1g1498 1171 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Ssu1g1498 1171 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Ssu1g1498 1171 SMART BRCT_7 806 899 IPR001357 -
Ssu1g1498 1171 SMART BRCT_7 653 729 IPR001357 -
Ssu1g1498 1171 MobiDBLite consensus disorder prediction 1129 1159 - -
Ssu1g1498 1171 SUPERFAMILY BRCT domain 655 740 IPR036420 -
Ssu1g1498 1171 MobiDBLite consensus disorder prediction 1123 1159 - -
Ssu1g1498 1171 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Ssu1g1498 1171 Gene3D BRCT domain 798 909 IPR036420 -
Ssu1g1498 1171 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Ssu1g1498 1171 CDD OBF_DNA_ligase_IV 448 592 - -
Ssu1g1498 1171 MobiDBLite consensus disorder prediction 962 1066 - -
Ssu1g1498 1171 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Ssu1g1498 1171 Gene3D BRCT domain 665 779 IPR036420 -
Ssu1g1498 1171 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Ssu1g1498 1171 MobiDBLite consensus disorder prediction 1002 1066 - -
Ssu1g1498 1171 SUPERFAMILY BRCT domain 792 911 IPR036420 -
Ssu1g1498 1171 MobiDBLite consensus disorder prediction 612 627 - -
Ssu1g1498 1171 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1498 214 601 Core DNA Replication Machinery Family AT1G08130 27.792 5.25e-32 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1498 K10777 - gmx:100816002 2089.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1498 1 35022448 35070416 Ssu1g1498 1 35022448 35070416 ECH