Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1494 ATGAGAAACTGGGTGGGACCGAATGTCTGCAACTACACCTACATTTTCTATGCTCTCGCGCCAGATAATCTGAAGATCCATACCATTGTCAGAATTGACCTCCATCACAGCAACATTGTCAAATACCTCCTAGAAGAGCTCGGTTTGCTCACTGACCTCGCATTGTTCCACATCAACACTAACTACTTTTGCAGCACCGTGCCGCACAAGTTTGACCACCTCAAACTCCTCTTCAAGTTAGATCTCAACAACAATATCTTCCCTAAAAAGTTCCTCAACGTGGTGCTGCAACTCTTGCAGCTCAAGTTCCTAACTTTGAGTGGAGTACTTGCTTCACATGGAGTACAATAA 351 0.4444 MRNWVGPNVCNYTYIFYALAPDNLKIHTIVRIDLHHSNIVKYLLEELGLLTDLALFHINTNYFCSTVPHKFDHLKLLFKLDLNNNIFPKKFLNVVLQLLQLKFLTLSGVLASHGVQ 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1494 116 Gene3D Ribonuclease Inhibitor 1 113 IPR032675 -
Ssu1g1494 116 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 106 - -
Ssu1g1494 116 SUPERFAMILY L domain-like 21 108 - -
Ssu1g1494 116 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 3 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1494 Ssu-Chr1 34924500 34926079 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1494 3 106 Leucine-rich Repeat extension Gene Families AT3G24480 65.385 1.26e-40 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1494 - - gmx:106799218 119.398