Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1493 atgcGGGATGCGGAGAATTTAAATAAGAACGGATCTGGAAAATCCAGTTACTCAAAGGAACAGACTAAGTCCAAGCTAGTTTCCGCAAAATTCAAAACAAGTAGCACTAAACGCCAAGGGGAGAAACACAAAGTGAAGTCAAAATCTCATAAACACAGAGTTGGTACAAACGAATCAAAGAAGACAGTCACTGATTCTTCTATTAAGGCATCACTTGAGGattcttcaaataaaaaagtgattattaGAAAAAATCTGCATAAAACTGATGGGAAATCTTCACAGATGCTGTCTTCAACAAAGCGACAAGGAGGAAAAAATTCTCATAGTTGTAGAAAAGAGGGGAATGATGTTGATGGGGAGGCAAAGAATCAAAAATGTAAGaggaggagaaagaagaaaagacgAAGGGATAACATGGATCTCGATGATGCTTCACGGCTGCGAAGGAGAACAAGATACCTCTTAATTAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCCAGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAGAAGcagattttaaaatgtaaacttAGTATTCGTGATGCCATACGCCAGCTAGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACGTGCAATCGTGCTTTTCACCAAAGATGTCTTAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGGTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTACTTGGCAGGAAGTATTCAAGGAAGAGGCTGCTCTGCCTGATGGTGATATTGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGACGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACGGCATCAACGCAGAAGGAGATGATGAAGATGCATCCAATGATTTAAGCAGTTCTTCCAGTCTGCGGTCTTTGAATGGCGAATGTTTTCCAGTAGATGAAGGCGTCAGCCTTGAATATTATTCTGTTAATAGCTGCATAGATTCTGATGAGTCTGGGGAAATAGCGTGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCAACCATGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGAAGCTGTCAATACTCTTATGACTCTGCATGAAAGTGAGAATAAATATCCCAAAAATGGAAGCAATAAATATTCCAATAATGGGATCAATGATATAATAAGAGATGGTTCTTCAGGCATTCAAATAAGAAAATCTTGTTTCAGGATTCCGCTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAACGAGCTTCCTCCAAGATCCGTGAAGGAAGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACTTCTAAGATCTCAAAGGATTCTATATCTCAAAACGTGGAGAAAGATGAGCTTTTGAAATCAAAGGTCTCCAAAATTACTGTGATTCATTCCCAGAAGgatgataaaaatatcacaggcaaagagaaaaataaattatctagtaatcttttgaagaaaaagcAACCAAAAATATCTTCACCTGTGGCAAACAAGGACTCTCTGGAGGTCAGCGACGATGTGAAGTTAAAGAAACtgttgaaaaaaaggaaaagaagggtaaattttatatttgaaggAGATTCTCAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATTAAACTAGATAGCATGAAGCAAATATTAAATGAAGTTCAAAGTTGCAGAGCAAAAGGTTCAAATAAACTCTATTCGAATGAACCCTCTATTATATATCTACCCACAGCTGAGTTAAGGGAAAAGgttgaataa 2169 0.3651 MRDAENLNKNGSGKSSYSKEQTKSKLVSAKFKTSSTKRQGEKHKVKSKSHKHRVGTNESKKTVTDSSIKASLEDSSNKKVIIRKNLHKTDGKSSQMLSSTKRQGGKNSHSCRKEGNDVDGEAKNQKCKRRRKKKRRRDNMDLDDASRLRRRTRYLLIKMKLEQNLIDAYSREGWKGQSREKIRPEKELLRAKKQILKCKLSIRDAIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQEVFKEEAALPDGDIALLNPEEEWPSDDPEDDDYNPERKEDSHGINAEGDDEDASNDLSSSSSLRSLNGECFPVDEGVSLEYYSVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAQPCEQVSEDEDWGPGKRKRREKESEAVNTLMTLHESENKYPKNGSNKYSNNGINDIIRDGSSGIQIRKSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSKISKDSISQNVEKDELLKSKVSKITVIHSQKDDKNITGKEKNKLSSNLLKKKQPKISSPVANKDSLEVSDDVKLKKLLKKRKRRVNFIFEGDSQAAELEFERLSKVKIKLDSMKQILNEVQSCRAKGSNKLYSNEPSIIYLPTAELREKVE 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1493 722 MobiDBLite consensus disorder prediction 107 125 - -
Ssu1g1493 722 ProSiteProfiles Zinc finger PHD-type profile. 233 290 IPR019787 -
Ssu1g1493 722 SUPERFAMILY FYVE/PHD zinc finger 227 292 IPR011011 -
Ssu1g1493 722 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 6 697 - -
Ssu1g1493 722 CDD PHD_PRHA_like 235 287 IPR045876 -
Ssu1g1493 722 SUPERFAMILY Homeodomain-like 499 562 IPR009057 -
Ssu1g1493 722 Pfam PHD-finger 235 290 IPR019787 -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 8 34 - -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 41 55 - -
Ssu1g1493 722 CDD homeodomain 504 551 IPR001356 GO:0003677
Ssu1g1493 722 ProSiteProfiles 'Homeobox' domain profile. 496 556 IPR001356 GO:0003677
Ssu1g1493 722 MobiDBLite consensus disorder prediction 1 144 - -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 347 361 - -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 76 90 - -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 60 74 - -
Ssu1g1493 722 PANTHER POLYCOMB PROTEIN PCL 6 697 - -
Ssu1g1493 722 SMART HOX_1 498 560 IPR001356 GO:0003677
Ssu1g1493 722 MobiDBLite consensus disorder prediction 91 105 - -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 329 373 - -
Ssu1g1493 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 284 IPR013083 -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 332 346 - -
Ssu1g1493 722 MobiDBLite consensus disorder prediction 434 456 - -
Ssu1g1493 722 SMART PHD_3 235 288 IPR001965 -
Ssu1g1493 722 ProSitePatterns Zinc finger PHD-type signature. 236 287 IPR019786 -
Ssu1g1493 722 Gene3D - 499 565 - -
Ssu1g1493 722 Pfam Homeodomain 509 551 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1493 Ssu-Chr1 34918361 34924209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1493 135 561 Homeobox Transcription Factor Family AT4G29940 56.293 1.72e-155 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Ssu1g1493 PHD 8.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1493 - - gmx:100787118 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0698 6 10919954 10924501 Ssu1g1493 1 34918361 34924209 PCT