Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1451 ATGGAGTGGGACAGCAATTCCGATCTCAGCGGCGACGACGACGACGCCGTTTCGTACATCCTCAACGGCGACGACGAGGACGATGACGCCGTCGGACCCCTCCCCTTCCCCGTCCTCCAAACGGCGCCCTGCGGCTTCGTCGTCACCGACGCGCTCGATCCCGACCACCCCATCATATACGTCAACGCCGTTTTCGAGATGGTCACCGGCTACCGGGCCGAGGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGACGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAAATTAGAAGATGCCTTGAGGAAGGGGTTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACACCTATATATGGAGATGATGAGATAACTCATGTCATTGGAATCCAATTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACAATTAAGGAATCTACTAAATCATCAGATCGGTTGCATTCTGTGCTTTCCTCGTTGCATCCTCTTCCAGTGGGGGACCGTAATGTTACTCGTGGAGTTTGTGGGATATTGCAATTGAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCAATTGTTTGAGCTAACAAAGAATGAAGACCTTTGGAGAATAGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGACTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCGGTTGGTAATAGAGTAGTCCTATTTGGGGGTGAAGGGGTTAACATGCAACCGATGAATGATACCTTTGTATTGGATCTCAATTCTAGTAATCCCGAGTGGCAACATGTCCAGGTAAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCCAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGATGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCGCGTCTGGGTCACACACTATCCGTTTATGGTGGTAGGAAAATACTAATGTTTGGGGGTCTGGCTAAGAGTGGGCCCCTACGTTTTCGCTCCAGTGATGTATTCACAATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACAGGGAGTGGAATGCCCGGTGCTGGAAATCCTGGAGGCATAGCTCCTCCTCCTAGGCTTGATCATGTGGCTGTTACCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATCCTAGATCCAACTGATGAGAAGCCGACATGGAGAATCCTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGTACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCAAGTTCTGTTATCTAG 1848 0.4919 MEWDSNSDLSGDDDDAVSYILNGDDEDDDAVGPLPFPVLQTAPCGFVVTDALDPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLEEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTIKESTKSSDRLHSVLSSLHPLPVGDRNVTRGVCGILQLSDEVLSLKILARLTPRDIASVGSVCRQLFELTKNEDLWRIVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVTLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSVI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1451 615 PANTHER ADAGIO PROTEIN 1-LIKE 1 614 - -
Ssu1g1451 615 TIGRFAM sensory_box: PAS domain S-box protein 53 151 IPR000014 -
Ssu1g1451 615 Gene3D - 197 247 - -
Ssu1g1451 615 Pfam Galactose oxidase, central domain 361 410 - -
Ssu1g1451 615 CDD PAS 42 144 IPR000014 -
Ssu1g1451 615 ProSiteProfiles PAS repeat profile. 38 113 IPR000014 -
Ssu1g1451 615 SUPERFAMILY PYP-like sensor domain (PAS domain) 42 152 IPR035965 -
Ssu1g1451 615 SUPERFAMILY Galactose oxidase, central domain 285 600 IPR011043 -
Ssu1g1451 615 SUPERFAMILY F-box domain 194 264 IPR036047 GO:0005515
Ssu1g1451 615 Gene3D - 503 614 IPR015915 GO:0005515
Ssu1g1451 615 Gene3D - 277 502 IPR015915 GO:0005515
Ssu1g1451 615 Gene3D PAS domain 36 163 - -
Ssu1g1451 615 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g1451 615 Pfam Galactose oxidase, central domain 299 349 - -
Ssu1g1451 615 Pfam Kelch motif 523 570 IPR011498 GO:0005515
Ssu1g1451 615 Pfam Kelch motif 456 507 IPR011498 GO:0005515
Ssu1g1451 615 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 614 - -
Ssu1g1451 615 Pfam PAS domain 43 152 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1451 Ssu-Chr1 33489038 33498833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1451 38 153 AGC Kinase Gene Family AT5G58140 34.188 3.64e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1451 K12115 - gmx:100802828 1168.68