Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1449 ATGAGTTTTCGGTTTTCTCCCCCATCGTTCCACAGTTCATCTGACGATTTTCAGACCAGTTTTGACAAATTTAATGAAAGTGCGAATTCAACTATGAAATGGGCAGTAATAGCGTCCATTGttTCTGGAGTGGTGGGACTAATAGCTATTATAGCAATAGTATATGCCATTATTGAGTGCTTGAAGAAGGCAGGAGAAGCAATTCCTGCATATGCCCAGCTTTCGACTACAGAGAAGGATCATAAAACTTCAAAGTCATTTCCTTCAACTAGTGAAATTGAAGTAGTAATACCACTAGATTCCACAGTTCAAGGTTCAAAAGCTGAGTTTCCAACAATGGAAAGATTCCTAAGCAACATCAACAAGGAGAAACCCATTAGATTCTCTCCTGAGCAACTTGATATAATTACATGGAACTATTCAACCATATTGGGTTCAGGTGCTTTTGGGGTTGTCTACAAGGGGGAATTGTCCAATGGAGAACATGTGGCTGTCAAAGTTATCAACAGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCAGAAGTTGGCACTATTGGAAGAACTTACCATGTGAATCTAGTCAGGCTTTATGGTTTCTGCTTCCACTGTGACAAGCGTGCTCTTGTTTATGAGTATGTGGAAAATGGGTCTCTCAACAAGTACTTGTTTGGCAGCCAGAACCGAGACATTGAGTTGGGGAAGCTTCATGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAGGAATGTCAACAAAGAATAATTCATTATGATATTAAACCAGAGAATGTTCTCCTTGACATGAACTTGGAACCAAAGGTAGCAGATTTTGGCCTGGCAAAGCTTTGCAGCAGAGAAAATAGTGTTGCAGTCAATACACACTTCAGAGGAACAAGGGGATATGCTGCACCTGAAATGTGGAAGCCTTATCCGGTGACTCACAAGTGTGATGTTTATAGTTTTGGCATTCTCCTCTTTGAAAGTGTAGGGAGGAGAAGGCATTTTGATGATAACTACAATGAATCACAACAATGGTTTCCTAAATGGACATGGGATATGTTTGAGAATAATGAGTTATCTGTAATGCTTTCGCTTTGTGGAATTGAAGAGAAACACAAGGAGAAACCCGAGAGAATGTCAAAGGTGGCTCTATGGTGTGTTCAGTATTCACCAGATGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTAGAGggtgaaattgaaatttctccACCTCCATTTCCCTTCCAAAACCTGGTGTCTCGTGAGCCAAACTTGACTCCACAAGGAACCACTGCAAATTCAGATACTACTACGTCATGGGAGACAGAATCTTCCAGAGAATCTGGTTCCAAAACCAAGCACAATACATTTCAGATCGAAAAACCTGCTTAG 1410 0.3993 MSFRFSPPSFHSSSDDFQTSFDKFNESANSTMKWAVIASIVSGVVGLIAIIAIVYAIIECLKKAGEAIPAYAQLSTTEKDHKTSKSFPSTSEIEVVIPLDSTVQGSKAEFPTMERFLSNINKEKPIRFSPEQLDIITWNYSTILGSGAFGVVYKGELSNGEHVAVKVINSLDMGMEEQFKAEVGTIGRTYHVNLVRLYGFCFHCDKRALVYEYVENGSLNKYLFGSQNRDIELGKLHEIAIGTAKGIAYLHEECQQRIIHYDIKPENVLLDMNLEPKVADFGLAKLCSRENSVAVNTHFRGTRGYAAPEMWKPYPVTHKCDVYSFGILLFESVGRRRHFDDNYNESQQWFPKWTWDMFENNELSVMLSLCGIEEKHKEKPERMSKVALWCVQYSPDDRPLMSTVVKMLEGEIEISPPPFPFQNLVSREPNLTPQGTTANSDTTTSWETESSRESGSKTKHNTFQIEKPA 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1449 469 ProSiteProfiles Protein kinase domain profile. 138 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1449 469 Gene3D Transferase(Phosphotransferase) domain 1 214 415 - -
Ssu1g1449 469 ProSitePatterns Protein kinases ATP-binding region signature. 144 166 IPR017441 GO:0005524
Ssu1g1449 469 MobiDBLite consensus disorder prediction 452 469 - -
Ssu1g1449 469 SMART serkin_6 138 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1449 469 Pfam Protein kinase domain 141 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1449 469 MobiDBLite consensus disorder prediction 425 451 - -
Ssu1g1449 469 Gene3D Phosphorylase Kinase; domain 1 112 213 - -
Ssu1g1449 469 PANTHER RUST RESISTANCE KINASE LR10-RELATED 112 426 IPR045874 GO:0004672
Ssu1g1449 469 PANTHER PUTATIVE-RELATED 112 426 - -
Ssu1g1449 469 SUPERFAMILY Protein kinase-like (PK-like) 121 409 IPR011009 -
Ssu1g1449 469 MobiDBLite consensus disorder prediction 423 469 - -
Ssu1g1449 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1449 Ssu-Chr1 33422750 33424623 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1449 127 457 Receptor kinase-like Gene Family AT5G38280 40.237 4.58e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Ssu1g1449 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1449 - - gmx:100820269 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1449 1 33422750 33424623 Ssu1g1449 1 33422750 33424623 ECH