Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1446 ATGTCCACCACCAACTCCACCCCCACAGATAACGATTCTGGGCCTGAGGCAAGTGTAATTATCATCGTCATAGTTGTCGTTCTTGTGAAGATAGGTCTTTTCATTTGGATAGTGCCCAAATGCATGAAAAGATATCAGGTTCATGTCAATCGCAGATCATCATTTAGACAAACACCAGACAAACAATTTATGACACTCACTATGGATAAATTTCTGAATGACATGGAAAAGGAGAAGCCAATCAGGTTCACTGATCAGCAGCTAAGGATTGCAACTGATAATTACTCTTATCTGTTGGGGTCAGGAGCATTCGGAGCTGTTTATAAAGGAAGTTTTAGTAATGGAACCATCATAGCTGTGAAGGTTCTACGTGGGAGTTCTGACAAGAGAATTGATGAGCAGTTTATGGCAGAAGTGGGTACCATTGGTAAAGTTCATCATTTCAATCTAGTTCGTCTGTATGGATTTTGCTTTGAAAGTCACTTGAGAGCACTGGTTTATGAGTACATGGAGAATGGCGCCCTTGAGAAGTACCTGTTTCATGAAGGCACGACCTTATCATTTGAAAAGCTTCACGAGATTGCAGTTGGCACAGCTAGAGGCATTGCTTACTTGCATGAAGAATGCCAACAGAGAATAATCCACTATGACATTAAACCAGGAAATATTCTCTTGGACAGGAACTTCAACCCTAAAGTTGCTGATTTTGGTTTGGCCAAGCTTTGCAACAGGGACAATACTCATGTAACCATGACTGGGGGTAAGGGGACTCCTGGTTATGCTGCACCTGAACTTTGGATGCCATTTCCTGTAACTCACAAGTGTGACGTTTACAGCTTTGGCATACTGTTATTTGAAATCATTGGCAGGAGAAGACACCATAACATTAACCTTCCAGAAAGCCAGGTGTGGTTTCCAATGTGGGTTTGGGAAAGATTTGATGCTGAAAAAATGGGGGATTTGATAACAGCCTGTGGAATAGAGGATCAAAATAGGGAAATTGCAGAAAGAATTGTAAAGGTAGCTCTGTCATGTGTTCAGTATAGGCCAGAATCAAGACCTATAATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCTGTTGAATTTCCAAAACCTCAGAACCCATTTGAACACCTGATTGGTTGGACTTCCCGCACTCTTCCGGTCCAAGCATCACAGATCGATGCAGATACAAGTATTAGTTCCAACTCTTCAGCGATGGTAACTAAATCAGTCCCTGAACTTGCCACTCCTATGACCAAGTATGAGATTGAATTAGCCCCTCTGCCTAAAATTTATTCAACGATTTAG 1311 0.4165 MSTTNSTPTDNDSGPEASVIIIVIVVVLVKIGLFIWIVPKCMKRYQVHVNRRSSFRQTPDKQFMTLTMDKFLNDMEKEKPIRFTDQQLRIATDNYSYLLGSGAFGAVYKGSFSNGTIIAVKVLRGSSDKRIDEQFMAEVGTIGKVHHFNLVRLYGFCFESHLRALVYEYMENGALEKYLFHEGTTLSFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDRNFNPKVADFGLAKLCNRDNTHVTMTGGKGTPGYAAPELWMPFPVTHKCDVYSFGILLFEIIGRRRHHNINLPESQVWFPMWVWERFDAEKMGDLITACGIEDQNREIAERIVKVALSCVQYRPESRPIMSVVVKMLEGSVEFPKPQNPFEHLIGWTSRTLPVQASQIDADTSISSNSSAMVTKSVPELATPMTKYEIELAPLPKIYSTI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1446 436 PANTHER RUST RESISTANCE KINASE LR10-RELATED 20 426 IPR045874 GO:0004672
Ssu1g1446 436 PANTHER PUTATIVE-RELATED 20 426 - -
Ssu1g1446 436 SUPERFAMILY Protein kinase-like (PK-like) 77 364 IPR011009 -
Ssu1g1446 436 SMART serkin_6 93 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1446 436 ProSiteProfiles Protein kinase domain profile. 93 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1446 436 Gene3D Transferase(Phosphotransferase) domain 1 170 374 - -
Ssu1g1446 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Ssu1g1446 436 Pfam Protein tyrosine and serine/threonine kinase 98 363 IPR001245 GO:0004672|GO:0006468
Ssu1g1446 436 Gene3D Phosphorylase Kinase; domain 1 67 169 - -
Ssu1g1446 436 ProSitePatterns Protein kinases ATP-binding region signature. 99 121 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1446 Ssu-Chr1 33316772 33318190 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1446 82 376 Receptor kinase-like Gene Family AT5G38280 40.391 4.58e-74 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Ssu1g1446 PK_Tyr_Ser-Thr 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1446 - - gmx:100305451 654.44