Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1445 ATGCTAACAGGAGATAGCACTCTGGCTGCTAAGTATGTTCAGAGTCAGTTGAACCATACTCTAGACATTGTTCATGCAGAGCTTCTACCTGTGGAAAAGGCGGTGATCATTGAGAATTTCAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCGTGAATGATGCTCCTGCATTAGCCACAGCTGATATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTTGCAAATGAGACAGGCAATGCGATTCTCATGTCAAATGACATCCGAAAAATACCTGAAGCCATTCGGCTAGCAAGAAAAACTACTAGAAAGCTCATCGAGAATGTCATTATTTCAGTTGGCTTCAAGAGTGCCATACTGGCATTGGCAATTGCAGGACACCCTATAGTTTGGCTTGCTGTGTTGACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGACAAACccaaatatgaaagaaaatctACAAGTTCTAAATACGGCACCTTCTTGGAAGATATGACAATAACTCTACTTGACAAGAAAACTAACAGCAATGAGAACCAAGGGCTTCTTACTTCCGAAAAGTGCGGTAAGGATTGCTGTAAAATCGACCCTCATCGTGTGGCAACTACAAGCAAACATGAATCTTCTGGACTTTCAAACTTGAGCTTACTCAAGGGAAACCATCATGGGAACTTGGTCTCTGTTGAAGTTCATTTAGTGAAACCTTGCAATGGTTGCTGTCTAGGCAAAGTCAAAATGTGTGAGAACTCCTCCTGTGGAACAAATAATAGCTCTGATTGTTGCCAAGTGCAGTTTAAGACTGAAAAATGTGACACTGGTTCTGTTGTGACACAAGATGCCAGCATTGCCACCTTGGAGTCTGATGGCTATAAGGACAAGACTATGGATATTTCAGAGTTGTCTGGGACAAGTGGGATTCCCAAGTGCTGCAAGAACTCATGCTGTAATGATAGTGTTAACGATGTCAGTAGCCTTAGCCAGCCAGAAATTATTATCGAGTGA 1032 0.4138 MLTGDSTLAAKYVQSQLNHTLDIVHAELLPVEKAVIIENFKKDGLTAMIGDGVNDAPALATADIGISMGISGSALANETGNAILMSNDIRKIPEAIRLARKTTRKLIENVIISVGFKSAILALAIAGHPIVWLAVLTDVGTCLLVILNSMLILQDKPKYERKSTSSKYGTFLEDMTITLLDKKTNSNENQGLLTSEKCGKDCCKIDPHRVATTSKHESSGLSNLSLLKGNHHGNLVSVEVHLVKPCNGCCLGKVKMCENSSCGTNNSSDCCQVQFKTEKCDTGSVVTQDASIATLESDGYKDKTMDISELSGTSGIPKCCKNSCCNDSVNDVSSLSQPEIIIE 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1445 343 PRINTS P-type cation-transporting ATPase superfamily signature 49 68 - -
Ssu1g1445 343 PRINTS P-type cation-transporting ATPase superfamily signature 73 85 - -
Ssu1g1445 343 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 1 321 - -
Ssu1g1445 343 PANTHER HEAVY METAL ATPASE TRANSPORTER 1 321 - -
Ssu1g1445 343 Pfam haloacid dehalogenase-like hydrolase 1 63 - -
Ssu1g1445 343 Gene3D - 1 100 IPR023214 -
Ssu1g1445 343 PRINTS H+-transporting ATPase (proton pump) signature 49 65 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1445 343 PRINTS H+-transporting ATPase (proton pump) signature 81 106 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1445 343 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 1 126 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1445 343 ProSitePatterns Hypothetical cof family signature 2. 49 71 - -
Ssu1g1445 343 SUPERFAMILY HAD-like 1 150 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1445 Ssu-Chr1 33314871 33316094 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1445 1 203 Primary Pumps ATPases AT2G19110 57.820 1.64e-69 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1445 K01534 - gmx:100815324 570.081