Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1444 atggttgaaaatATGAAGAGAAGCAGCTTTGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCACTGGTTGAAAGAATTTTGAAGCCTCTTCAAGGGATCAAAGATGTCTCAGTGATAGTCCCTACCCGAACAGTCACTGTGGTCCATGATGTTCTCTTGATTTCTGAGTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCTAGTTTGAGACTACAAGGGGAGACTgataatgaaaagaaatggCCAGATTTACCTACGATGGCGAGTGGCTTGTTACTGGCACTTTCTTTCttgaagtatatatataacCCTTTGGGATGGTTGGCTCTTGGTTCTGTTGTCATTGGCTTCCCTAAGGTTCTACTCAGGGCCATAGCTTCCATTAGGGCTCTTACTCTTAATATCAATATTCTGGTTCTATTGGCAGTTTGTGGTACTGCTGCTTTGCAAGATTTTTGGGAGGCTGGAGTCATCATCTTCCTGTTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCCTCTTTAACAAGCATGGCTCCTCAAAAGGCTGTTATTGCCGAAACCGGGGAACATGTTGACGTCAATGATGTTAAGATCAACACCATACTTGCGGTCAAGGCTGGTGACGCTATTCCTCTTGATGGAATTGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCGTTACCTGTGACCAAAGAGTTAGATTCAGTAGTGTGGGCTGGAACTATTAATGTGAATGGATATGTAAGTGTAAAAACTAATGTGTTGGCAAAAGACACAGTGGTGGCTAGGATGTCAAAACTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGAACTCAAAGATTCATTGATAATTTTGCTAAGTACTATATTCCTGCTGTTGTCTTGATTTCAGCTAGCATTGCTGTGGTTCCAGCTGCATTGGAAGTTCCTGATATTAAGCCTTGGCTACATCTGGCAATTGTGGTTTTATTGAGTGCATGCCCCTGTGCTCTCATCCTCTCCACACCTGTTGCAATCTTTTGTGCTCTCACAAAAGCTGCAATAAGTGGATTACTACTGAAAGGTGGAGATTATATTGAAACACTTTCTGGAATTAAGACAGTGGCTTTTGATAAAACGGGCACAATAACAAGAGGAGAGTTCACTGTGACAGATTGTTCTGTTGTTGTAGACAACATTAGCATTGAAACTTTATTGTACTGGGTTTCAAGTATTGAGAGTAAATCAAGTCATCCTATGGCAGCCGCACTAGTGGAATATGGAATGTCAAATTCTATCCAGCCAATCCCAGAAAATGTGgagagttttcaaaattttccagGGGAAGGAGTTTTTGGTACAATTGATGGGAAGGATATCTATATAGGCAATAGGAGAATTGGTGCTCGAGCTGGCCGTGAAAAAGttGATTGTCACATGCAATTTCAAAGCCATGAAATTCTACCCCAAAACAATATTGTGGACCAACTCGGGTTGGAGTCTTCAGCTTAG 1548 0.4057 MVENMKRSSFEVLGMCCATEAALVERILKPLQGIKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLPTMASGLLLALSFLKYIYNPLGWLALGSVVIGFPKVLLRAIASIRALTLNINILVLLAVCGTAALQDFWEAGVIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGEHVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVTKELDSVVWAGTINVNGYVSVKTNVLAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVVLISASIAVVPAALEVPDIKPWLHLAIVVLLSACPCALILSTPVAIFCALTKAAISGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVTDCSVVVDNISIETLLYWVSSIESKSSHPMAAALVEYGMSNSIQPIPENVESFQNFPGEGVFGTIDGKDIYIGNRRIGARAGREKVDCHMQFQSHEILPQNNIVDQLGLESSA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1444 515 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Ssu1g1444 515 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Ssu1g1444 515 Gene3D - 399 486 IPR023299 GO:0000166
Ssu1g1444 515 Gene3D - 1 75 - -
Ssu1g1444 515 ProSiteProfiles Heavy-metal-associated domain profile. 7 73 IPR006121 GO:0046872
Ssu1g1444 515 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 4 486 - -
Ssu1g1444 515 SUPERFAMILY HMA, heavy metal-associated domain 3 73 IPR036163 GO:0046872
Ssu1g1444 515 Gene3D - 379 398 IPR023214 -
Ssu1g1444 515 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1444 515 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1444 515 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1444 515 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1444 515 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1444 515 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 390 489 IPR023299 GO:0000166
Ssu1g1444 515 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 139 496 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1444 515 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 161 408 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1444 515 Pfam E1-E2 ATPase 198 366 - -
Ssu1g1444 515 Pfam haloacid dehalogenase-like hydrolase 384 483 - -
Ssu1g1444 515 Gene3D - 177 291 - -
Ssu1g1444 515 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Ssu1g1444 515 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Ssu1g1444 515 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA4-RELATED 4 486 - -
Ssu1g1444 515 Pfam Heavy-metal-associated domain 10 63 IPR006121 GO:0046872
Ssu1g1444 515 CDD HMA 10 72 IPR006121 GO:0046872
Ssu1g1444 515 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 383 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1444 Ssu-Chr1 33309712 33314802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1444 3 484 Primary Pumps ATPases AT4G30110 59.959 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1444 K01534 - gmx:100815324 889.412