Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1443 ATGAAGTATATTCGGAGCAGCAGCTTAAAGAGGCTCTTCTCGTTAGGAAAACGCGGGTTTGGGGAAGAAAGCGATGTGGGGTTGGCGGTTCCTTCATATGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTATTTGATGCCACCAATGGCTTTAGCTCAGAGAATTTGGTTGGGAAAGGAGGGTATGCAGAGGTTTATAAGGGAAGGTTGAGTGGTGGTGAGGAAATTGCAGTGAAGAGGCTCACGAGAAATTCAAGGGAtgagaggaaggagaaggagtTTCTGATGGAGATTGGCACAATCGGTCACGTGCGCCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTTGGTTCTGTTGCTTCTCTTATTCACGATGAGAAGTTGCCTCCTTTGGATTGGAAGACAAGGTATAAGATAGTTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGATGCGAGAGGAGGATAATTCATAGGGACATCAAGGCCTCAAACATTTTGTTGACGGCAGATTTTGAACCCAAGATATCCGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCCGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGCTTGCACTGCTGGGCTAAACCAATACTAACCAAAGGGGAGATAGAAAAGGTGGTAGATCCAAGGCTTGAAGGGGCGTATGATGGGACACAGTTTAATAGACTAGCCTTTGCTGCCTCCCTGTGCATTCGGGCATCTGCAACTTGGCGACCTACCATGAGCGAGGTAGCTCAAATGCATTTGTTGCTCAACTTTGGTATTGGAGGTAATGGAGGAGTGGGAGATGGATAA 1023 0.4614 MKYIRSSSLKRLFSLGKRGFGEESDVGLAVPSYEEHPPRPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGRLSGGEEIAVKRLTRNSRDERKEKEFLMEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSTVGSVASLIHDEKLPPLDWKTRYKIVLGTARGLHYLHKGCERRIIHRDIKASNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHCWAKPILTKGEIEKVVDPRLEGAYDGTQFNRLAFAASLCIRASATWRPTMSEVAQMHLLLNFGIGGNGGVGDG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1443 340 PANTHER OS08G0249100 PROTEIN 30 323 - -
Ssu1g1443 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Ssu1g1443 340 Gene3D Phosphorylase Kinase; domain 1 32 133 - -
Ssu1g1443 340 SMART serkin_6 57 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1443 340 ProSiteProfiles Protein kinase domain profile. 57 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1443 340 Pfam Protein tyrosine and serine/threonine kinase 60 265 IPR001245 GO:0004672|GO:0006468
Ssu1g1443 340 Gene3D Transferase(Phosphotransferase) domain 1 135 328 - -
Ssu1g1443 340 SUPERFAMILY Protein kinase-like (PK-like) 34 326 IPR011009 -
Ssu1g1443 340 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Ssu1g1443 340 PANTHER OS04G0654600 PROTEIN 30 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1443 Ssu-Chr1 33291848 33295750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1443 41 329 Trihelix Transcription Factor Family AT1G68690 44.631 1.70e-71 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu1g1443 PK_Tyr_Ser-Thr 1.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1443 - - gmx:100801765 601.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1443 1 33291848 33295750 Ssu1g1443 1 33291848 33295750 ECH
Ssu6g0732 6 11550036 11554497 Ssu1g1443 1 33291848 33295750 PCT