Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1428 ATGAAATCCCTTGTGAGCCTCTACACCGGAGTCACCTACAACCGCTCCAGCATCCAAAACTGGCTCAACGGTAGCAACAACACCTGCCCCGTAACCATGCAGCCTCATCCAAATCTGGTCCGATTTAGTCCGCCATCAAACTGCTTTCGAACCGGTCCCATCCCTGGACCAAGCCCTCCAAGCCATCATCGACTTGCAAACCGACTCCCTCCTGTTCGTGTTGACGCTAAAGAAACCGCGAGGAGTATTGAATTTCTCGAACAAGTCGTCATCGTGTTAGGTTTAATTTTGGATGACATCGAAGATCGTGAGGGACTGAAAAACTCTatgttgaaagaaaagaaacaaagctTGGACACTCTACTTCTCGTTCTTCAACAAGGAAGCTCTTATTCAAAAATTGCCTCCGCTAGGGTTTTACACTTCATCACTGTGGACGCGGAGTCAAAGCTTTTAATCGTGAAGGAGGAAGGTGTGGTAATTGAATTGTTGAAATTGGCGACGTTGGAGAGCTGGAGAGATGCCAGGAGGGAGAGCATGAGTTTCAAAATGGTAGGGAAGGAGGGAGGAACTCAACATTTTTCGAAATGGGATGGAAGGAGGGAAATGAAGTGA 615 0.4602 MKSLVSLYTGVTYNRSSIQNWLNGSNNTCPVTMQPHPNLVRFSPPSNCFRTGPIPGPSPPSHHRLANRLPPVRVDAKETARSIEFLEQVVIVLGLILDDIEDREGLKNSMLKEKKQSLDTLLLVLQQGSSYSKIASARVLHFITVDAESKLLIVKEEGVVIELLKLATLESWRDARRESMSFKMVGKEGGTQHFSKWDGRREMK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1428 204 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 1 37 - -
Ssu1g1428 204 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 80 174 - -
Ssu1g1428 204 PANTHER WDSAM1 PROTEIN 1 37 IPR045185 GO:0061630
Ssu1g1428 204 PANTHER WDSAM1 PROTEIN 80 174 IPR045185 GO:0061630
Ssu1g1428 204 SUPERFAMILY RING/U-box 5 37 - -
Ssu1g1428 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 47 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1428 Ssu-Chr1 32435678 32436441 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1428 1 165 U-box Gene Family AT3G18710 36.279 5.80e-24 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1428 - - gmx:100801033 134.806