Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1425 ATGAAATCCCTTATGAGCCTCTACACCGGAGTCACCTATGACCACTCCAACATCCAAAACTGGCTCGACGGTAGCAACAACACCTGCCTCGCAACCATGCAGGTCCTCCAAACTAAGACTTCATTCCCAATTGCACTCTACAAAGCCTCATCCAAATCTGGTCCAATTCAGTCTGCCATCAAACTGCTTCCGAATCGGTCCTGTCCTCGGACCAAGCCCTCCAAGCCATCATCGACTTGCAAACCAACTCCCTCCTGTTTAATTTTGGATGACATCGAAGATCGCGAGGGACTGGAAAACTCTatgttgaaagaaaagaaacaaagctTGGACACTCTACTTCTCCTTCTTCGACAAGGAAGCTCTTATTCAAAAATTGCCTCTGCTAGGGTTTTACAATTCATCATCGTGGACGCGAAGTCAAAGCTTTTAATCGCGGAGGAGGAAGGTGTGGTAATTGAATTGCTGAAATCGGCGACGTCGGAGAGCTGGAGAGATGCCAGGAGGGAGAGCGGGAGTTTCGAAATGGTAGGGAAGGAGGGAGGAACTCAACATTTTTCGAAATGGGATGGAAGGAGGGaaatagctttttaa 594 0.4579 MKSLMSLYTGVTYDHSNIQNWLDGSNNTCLATMQVLQTKTSFPIALYKASSKSGPIQSAIKLLPNRSCPRTKPSKPSSTCKPTPSCLILDDIEDREGLENSMLKEKKQSLDTLLLLLRQGSSYSKIASARVLQFIIVDAKSKLLIAEEEGVVIELLKSATSESWRDARRESGSFEMVGKEGGTQHFSKWDGRREIAF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1425 197 PANTHER WDSAM1 PROTEIN 1 40 IPR045185 GO:0061630
Ssu1g1425 197 PANTHER WDSAM1 PROTEIN 87 165 IPR045185 GO:0061630
Ssu1g1425 197 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 1 40 - -
Ssu1g1425 197 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 87 165 - -
Ssu1g1425 197 SUPERFAMILY RING/U-box 5 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1425 Ssu-Chr1 32117773 32118539 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1425 1 157 U-box Gene Family AT5G09800 31.628 1.50e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1425 - - gmx:100801033 92.8189