Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1423 ATGGAGGATGCACGTAAAGGGGAGCAAGACGAGCAAGACAAGGATAAGGGAGGGGAAGACGTGAGGTACCGTGGTGTGAGAAGAAGGCCATGGGGTAAGTATGGGGCAGAGATTAGAGACCCAGCAAAACCTACGGGGAGGCAATGGTTGGGGACATTCGACACAGCAGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGGCTTGAGGGGTGCTCTTGCTATCCTTAATTTTCCTGATGAGTACCATTCTCATCTCCCTTTCTTGTCTTCttcgtcttcttcttcttcttctactaGTGTCGTTGGAAGTTCTTCTGCTCAACCACAGAGGGAAGTTATTGAGTTTGAGTATTTGGATGACAAAGTGTTGGAAGACCTTCTTGAGTtcgaagagaagagaaagaagaaagaataa 420 0.4238 MEDARKGEQDEQDKDKGGEDVRYRGVRRRPWGKYGAEIRDPAKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYHSHLPFLSSSSSSSSSTSVVGSSSAQPQREVIEFEYLDDKVLEDLLEFEEKRKKKE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1423 139 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g1423 139 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
Ssu1g1423 139 SUPERFAMILY DNA-binding domain 22 82 IPR016177 GO:0003677
Ssu1g1423 139 MobiDBLite consensus disorder prediction 88 110 - -
Ssu1g1423 139 CDD AP2 22 81 IPR001471 GO:0003700|GO:0006355
Ssu1g1423 139 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Ssu1g1423 139 PANTHER ETHYLENE RESPONSE FACTOR 1 134 - -
Ssu1g1423 139 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Ssu1g1423 139 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Ssu1g1423 139 ProSiteProfiles AP2/ERF domain profile. 22 80 IPR001471 GO:0003700|GO:0006355
Ssu1g1423 139 PANTHER DNA-BINDING DOMAIN 1 134 IPR044808 GO:0003700|GO:0009873
Ssu1g1423 139 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1423 Ssu-Chr1 31622941 31623360 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1423 21 136 AP2-EREBP Transcription Factor Family AT3G23230 64.754 2.80e-44 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu1g1423 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1423 - - gmx:100807295 177.948