Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1421 ATGGAGGAGGCACGTGAGAGGGAGcaagacaaagaaaaaagaggggAACAAGTGAGGTACCGTGGTGTGAGAAGGAGACCATGGGGTAAGTATGGGGCAGAGATTAGAGACCCAGCAAAACCTACGGGGAGGCAATGGTTGGGGACATTTGACACAGCGGAAGAAGCAGCTAGAGCTTATGATCGTGCAGCCATTGAATTGAGGGGTGCTCTTGCAATCCTTAATTTTCCTGATGAGTACTCTTCTCATCTccttttgtattattaa 267 0.4307 MEEAREREQDKEKRGEQVRYRGVRRRPWGKYGAEIRDPAKPTGRQWLGTFDTAEEAARAYDRAAIELRGALAILNFPDEYSSHLLLYY 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1421 88 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Ssu1g1421 88 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Ssu1g1421 88 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Ssu1g1421 88 PANTHER DNA-BINDING DOMAIN 1 81 IPR044808 GO:0003700|GO:0009873
Ssu1g1421 88 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Ssu1g1421 88 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Ssu1g1421 88 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Ssu1g1421 88 PANTHER ETHYLENE RESPONSE FACTOR 1 81 - -
Ssu1g1421 88 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Ssu1g1421 88 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1421 Ssu-Chr1 31596177 31596443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1421 16 80 AP2-EREBP Transcription Factor Family AT3G23230 75.385 1.37e-31 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g1421 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1421 - - gmx:100796977 146.747