Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1415 ATGGCGACGACGTCGGTGGTGCCGGCGAACCGGCGGCGGGCCGCGAACGCGGCGGAGGAGATGGACTTCGAGACGACAGAGGGCGTGAAGGCAATTGCGAGCTTCGAGGAGATGGGGATAAAGGACGATCTGCTCCGTGGAATCTACCAGTACGGCTTCGAGAAGCCCTCCGCCATTCAGCAACGGGCCGTCACGCCCATCATCCAGGGCCGTGACGTCATCGCCCAGGCCCAATCTGGAACAGGCAAAACGTCCATGATTGCGCTCACCGTTTGCCAGGTCGTCGATACCTCCGTCAGAGAGGTTCAGGTGTTAATCTTGTCACCAACGAGGGAACTGGCCTCACAGACTGAGAAGGTTATATTGGCTATTGGGGATTTCATTAATATTCAAGCTCATTCATGCATTGGAGGTAAAAGTGTGGGAGAGGATATAAGGAAACTTGAGTATGGAGTTCATGTGGTGTCTGGAACTCCTGGCCGTGTCTGTGACATGATCAAAAGGAGAACATTGCGCACGAGAGCTATCAAGATGCTAGTTCTAGACGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCTGACCTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAATAAGTTCATGACAGATCCTGTAAGGATCCTTGTTAAACGTGATGAATTGACATTGGAGGGAATCAAGCAATTTTTTGTTGCGGTCGAAAGGGAGGAATGGAAGTTTGATACCCTGTGTGATCTTTATGATACTCTCACCATCACTCAAGCTGTTATATTCTGTAACACTAAGCGAAAGGTGGACTGGTTAACCGAAAAAATGCGTAACAACAATTTCACTGTCTCATCAATGCATGGTGACATGCCTCAGAAAGAAAGAGATGCTATTATGGGAGAATTTCGTGCTGGAACAACCCGTGTACTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTACAGCAGGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGAGAGCTTTACATTCATCGAATTGGCCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCGATAAATTTTGTGAAGAGCGATGACATCAAGATCTTGAGAGATATTGAGCAATATTACAGTACTCAGATTGATGAAATGCCTATGAATGTTGCTGATCTTATTTAA 1221 0.4603 MATTSVVPANRRRAANAAEEMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQVLILSPTRELASQTEKVILAIGDFINIQAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1415 406 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Ssu1g1415 406 CDD SF2_C_DEAD 246 376 - -
Ssu1g1415 406 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Ssu1g1415 406 SMART ultradead3 52 249 IPR014001 -
Ssu1g1415 406 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 406 IPR001650 -
Ssu1g1415 406 Pfam Helicase conserved C-terminal domain 259 367 IPR001650 -
Ssu1g1415 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 389 IPR027417 -
Ssu1g1415 406 Gene3D - 17 237 IPR027417 -
Ssu1g1415 406 Gene3D - 238 406 IPR027417 -
Ssu1g1415 406 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Ssu1g1415 406 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 399 - -
Ssu1g1415 406 SMART helicmild6 286 367 IPR001650 -
Ssu1g1415 406 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Ssu1g1415 406 PANTHER BNAC03G41130D PROTEIN 19 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1415 Ssu-Chr1 31467868 31471764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1415 23 406 Eukaryotic Initiation Factors Gene Family AT3G19760 88.802 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1415 K13025 - gmx:100795032 778.089