Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1412 ATGGTCTTCTCAACTGCCTTTCTCCATGATGATGGCCcctttttttctagaaaaaggCCAAAAGTGTCAGATCTCGGACATCAAGATATAGATTTACATGCAGATGCAGAAATTTCCAGTGATATTTCCTTGTTCTCGCATCAAAATATAGAAAGGTACAGGAGTACTGGTGATGTTCCCTCTTCCAGCAATACTGACGATAAAGTTGATCCTGATTCTGGAATGGAGATGAGCTGCCCATCAAATGTTAGTAGTGGCTATGTTCCTGTGTGTTCAACCACAGGGAATATTTCACACATGGACCAGAGTTTCTGTGGCTATGTGCAACAGCCTGCTTATGTGAGTGGATGGATGTATGTGAATGAAAATGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAGGGCTTAACTACCGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCATTGAATTACTTCAAGCAGTTCCCTGAGCATGTTTCCACTGGGTTTGCATATCTGAGTATGGGTATCTCAGGCACAAGGATGCCTACAATGGCTGTATATGAGCAAGATAGTTCTTTTGAGCATGCTGCTCCTCTGGCTGTTAACCCTGATTCGCAGTCAGTTTCACAGTTGAATGTCAATTACTGCATTAAGGAATCCAATCACTTAAATTCAAACTCAGAGGCATTCAACAGTTTAATATCTTGTCAGATGTTAGGTGAAGAATGCTGCTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCACATTCTATTAACGAATTGATTTCCTGGCACCGTCATGGATATCTTAAAGATTCAATGGTGATCTCTCATTCTGACAAGAAGTATGGAACCTTTGTGCTATTGCATGCTGTAAATGCATTAAAAGGAGATATCTCTGGATCCATTTGTAGATCAGGTTCCACAAGTAATGAGGTTGGTGATATGGTAAACTTAATTAGTGAAATGTCTGAGAACATTTCTTCCCAATTGCACACGGGTATAATGAAAGCTGCCCGCAGAGTTGTGCTAGATGGAATTATTGGTGATATCATTGCAGAATTTGTTATGGAAAAGAAACGTAAGAGGCATAAGCTTGAATCAACTGACCGTACTCCTGAAAACAAGATGTCTAAGTTTTCTGTGGAGATCAGTAAGGGTTCTGCTTTTCCCAATGATCCTGCTTCTTCCCACATTTTGGATGATCAGACTTGTCATGGAAGTTCCAGACTGTCTTCAGCCAGTATTAAATCAGTTGGAAGCATTGAAAATTTTTGGTGGTCATATGCCGTTGTTCGCAAGGTACTTCTTGATTATTGCATGCAAGTCATGTGGAATGCAGTGTCTTTTGACACAATAGGAGAATACTTATCTTCCTGGAGGACGAGAAAGCTTTGGTCTCATCCTAAGCCTCAACCATCTGCTAATGGATGTAAAGATCATGCTGAAAAGATTGAATCAAAAGCTTTGACTGTCAAGCCAGATTCTTCTGAATGCAATGCTGATGGCTATAATCAGTCTGGAGTACTGGCGACAGCAAGAAATCATCCTCAGTTATTTTCATCTCCTAGTAGCCTCAAAGGTGGAAACTTACTGGAAGGTCAAAAAGTTTCATGCCCTTATCTTAACACTAAAGATTTGACATGCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGCGTCTTTAGCTGATTACATTCGAAGTTTTGTTGAAAAGGAAGTGAACAAATTAATTCCTTCCCCAGAGGAAAACAAATTGAATGAgGTCGCTGTTAGTGACACTTGTTTTTCAGAGATACTTTCTGATAAAATATCTGTGAAGGAAATTCTAAATGACAAGTCTATGGATCCTGTAAAAGCTGGAAATTCATTTGGCGAGTCTGCATCCGGAAATCATATGTCTGATGTATTTTCAAAAGCATTTAAGGAGTTGTGTGGACATGTAGATGATGTGGTTGAAGAGGAGATTGATGACCTACCACCTGGACTTGAAGAGAAATCTCAAACAATTGTCCTGCACAACAATTCAAAATTTCGACCTTCAAGGTTGGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAACTGCACTGTGCCGACAAAAGCTGCATGATGAAGTTCTGGAAGAGTGGAAGTTGTTTCTTGATTCTGTGCTCAATCAAGTTTTTATATCATCATGTaccataaagaaaaagaaacattttaagTCTGATGGTCATGAgaaaggaaaaaggtTCAATGCAAGCAAGGAACATTTGAATGGTGCTCCTTCTGGACTGGGAAGAGTGAAGGAAGGAGCAAATAGTTCTTCTGAAGTACCTCTGGCGATTGGAAAGTATACGTATTGCCGGAAGAAGCTGTCACAGAAGGAGTTATTTTCCTCTAAATCTGTAGCAGAAAAAGATTCTAGGCCAGGGAAGCTGCCTGTGGCCAAGTTAAGGAAACATGTCTCTGGAGATGTCGATGAGGCTGCAGAGGTTAAAATAATAGCTGCTCTTAAACGTGAGAAGACTAGGATGATTAAAGGGAAGAAGGATACATCTTCAAAGGGCAAGTCTTCTGTCAGTGTCAATAGTAGCTCGCACAGTGATCAATTATCTTTAAAGAATAAAGCTGGTCAGAAAGTGTTGAAGTTTTCAGATGATGTTAAGGATGTAAAATCCAATGTAAAGAGGCTTTCAGTGTCAACTGATAACAGTGTTGGCACGAAGAAGGTTGTCAAAAGTGACGGCTGTGATGGCATCGTTAAAGAGAAGACCATAAGCCATTGCTCCAAAGAGATACAAAATGCAACACATAAAGtatcaaaatcaaaaaggaAACATCAAATGGATGGTACAGCATCTTCACGTCCTACaaaggttttgaaaattttaaatggtgGTGCTTATCTGGGAGCCGCCAGTAAACAGGTTACTGGGGCAAGGAGGAAGTCTGCTAAATCCAAGCCATTGAATTTGTGTCCTAGATCTGATGGATGTGCTAGGACTTCTATTGATGGTTGGGAATGGCATCAATGGTCTCGAAGTGCCACTCCTGCATATAAAGCACGTGTTAGAGGTCTTCCATGTGTCCATAACAAGTGCATAGattctgaaaataatttatctcaATTGTCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGAGTGAAATTGCGTAACCTTCTTGCTGCTGCAGAAGGTGCGGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAGAAGCATTTACGTTTTCAAAGGAGCAAGatccatgactggggtcttgtCGCCTTGGAGCCGATCGAGGCAGAGGACTTTGTGATTGAATATATTGGAGAACTAATTCGTCCtcggATATCTGATATACGTGAACGTCAATATGAGAAGATGGAAATTGGTAGCAGTTACCTTTTCAGACTTGATGATGGTTATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCACTCTTGTGAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCGAAACGGCATATAGCTGCTGGTGAAGAAATTACGTACAATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCCTGTAACTGTGGTTCCAGAAAGTGTCGTGGGTCACTGAATTAG 3696 0.3912 MVFSTAFLHDDGPFFSRKRPKVSDLGHQDIDLHADAEISSDISLFSHQNIERYRSTGDVPSSSNTDDKVDPDSGMEMSCPSNVSSGYVPVCSTTGNISHMDQSFCGYVQQPAYVSGWMYVNENGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPEHVSTGFAYLSMGISGTRMPTMAVYEQDSSFEHAAPLAVNPDSQSVSQLNVNYCIKESNHLNSNSEAFNSLISCQMLGEECCWLYEDEKGMKHGPHSINELISWHRHGYLKDSMVISHSDKKYGTFVLLHAVNALKGDISGSICRSGSTSNEVGDMVNLISEMSENISSQLHTGIMKAARRVVLDGIIGDIIAEFVMEKKRKRHKLESTDRTPENKMSKFSVEISKGSAFPNDPASSHILDDQTCHGSSRLSSASIKSVGSIENFWWSYAVVRKVLLDYCMQVMWNAVSFDTIGEYLSSWRTRKLWSHPKPQPSANGCKDHAEKIESKALTVKPDSSECNADGYNQSGVLATARNHPQLFSSPSSLKGGNLLEGQKVSCPYLNTKDLTCILESVENELHFSSKASLADYIRSFVEKEVNKLIPSPEENKLNEVAVSDTCFSEILSDKISVKEILNDKSMDPVKAGNSFGESASGNHMSDVFSKAFKELCGHVDDVVEEEIDDLPPGLEEKSQTIVLHNNSKFRPSRLVECNPKITEYVATALCRQKLHDEVLEEWKLFLDSVLNQVFISSCTIKKKKHFKSDGHEKGKRFNASKEHLNGAPSGLGRVKEGANSSSEVPLAIGKYTYCRKKLSQKELFSSKSVAEKDSRPGKLPVAKLRKHVSGDVDEAAEVKIIAALKREKTRMIKGKKDTSSKGKSSVSVNSSSHSDQLSLKNKAGQKVLKFSDDVKDVKSNVKRLSVSTDNSVGTKKVVKSDGCDGIVKEKTISHCSKEIQNATHKVSKSKRKHQMDGTASSRPTKVLKILNGGAYLGAASKQVTGARRKSAKSKPLNLCPRSDGCARTSIDGWEWHQWSRSATPAYKARVRGLPCVHNKCIDSENNLSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKHLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRPRISDIRERQYEKMEIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYNYKFPLEEKKIPCNCGSRKCRGSLN 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1412 1231 MobiDBLite consensus disorder prediction 865 884 - -
Ssu1g1412 1231 ProSiteProfiles SET domain profile. 1092 1209 IPR001214 GO:0005515
Ssu1g1412 1231 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 14 1231 - -
Ssu1g1412 1231 ProSiteProfiles Post-SET domain profile. 1215 1231 IPR003616 -
Ssu1g1412 1231 Pfam SET domain 1104 1208 IPR001214 GO:0005515
Ssu1g1412 1231 Gene3D SET domain 1035 1231 IPR046341 -
Ssu1g1412 1231 MobiDBLite consensus disorder prediction 54 76 - -
Ssu1g1412 1231 SUPERFAMILY GYF domain 247 304 IPR035445 -
Ssu1g1412 1231 Gene3D - 243 330 IPR035445 -
Ssu1g1412 1231 Gene3D - 107 179 IPR035445 -
Ssu1g1412 1231 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 14 1231 IPR044570 GO:0042800|GO:0051568
Ssu1g1412 1231 Pfam GYF domain 254 291 IPR003169 GO:0005515
Ssu1g1412 1231 MobiDBLite consensus disorder prediction 945 965 - -
Ssu1g1412 1231 SMART PostSET_3 1215 1231 IPR003616 -
Ssu1g1412 1231 MobiDBLite consensus disorder prediction 855 884 - -
Ssu1g1412 1231 SUPERFAMILY SET domain 1087 1228 IPR046341 -
Ssu1g1412 1231 CDD SET_SETD1 1080 1227 - -
Ssu1g1412 1231 ProSiteProfiles GYF domain profile. 251 307 IPR003169 GO:0005515
Ssu1g1412 1231 MobiDBLite consensus disorder prediction 54 68 - -
Ssu1g1412 1231 SMART set_7 1092 1215 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1412 Ssu-Chr1 31243439 31258363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1412 1083 1231 C2H2 Transcription Factor Family AT2G23740 37.059 1.20e-18 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu1g1412 SET 1.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1412 - - gmx:100805708 2081.22