Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1409 ATGGTGAAGTTTCTGAAGGCGAACAAGGCGGTGATCGTGCTGCAGGGTCGTTACGCGGGGAAGAAGGCGGTGATAGTGAGGACCTTCGATGAGGGGACGCGCGAGCGAGCCTACGGGCACTGTTTGGTGGCGGGGATAAAGAGGTACCCGGCCAAGGTGATCAAGAAGGACTCGGCGAAGAAGACCGCGAAAAAGTCGCGCGTGAAGGCGTTCATCAAGCTGGTGAACTACCAGCACCTGATGCCCACGCGCTACACGCTCGACGTGGACCTCAAGGACGCGGTCACCCCCGACGCGCTTCATTCCAAGGACAAAAAGGTCACCGCGCTCAAGGAGACCAAGAAGCGCCTCGAGGAGCGCTTCAAGACGGGAAGAACCGGTGGTTCTTCACCAAGCTCAGGTTCTGAGCCAACGCTATCCATTTTTTGCTTTCAACTGTTTTGGATCTCGCTTTGTCCTTGCTAA 465 0.5677 MVKFLKANKAVIVLQGRYAGKKAVIVRTFDEGTRERAYGHCLVAGIKRYPAKVIKKDSAKKTAKKSRVKAFIKLVNYQHLMPTRYTLDVDLKDAVTPDALHSKDKKVTALKETKKRLEERFKTGRTGGSSPSSGSEPTLSIFCFQLFWISLCPC 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1409 154 PANTHER 60S RIBOSOMAL PROTEIN L27 1 125 - -
Ssu1g1409 154 SUPERFAMILY Translation proteins SH3-like domain 3 108 IPR008991 -
Ssu1g1409 154 PANTHER 60S RIBOSOMAL PROTEIN L27 1 125 IPR001141 GO:0003735|GO:0005840|GO:0006412
Ssu1g1409 154 Coils Coil 100 120 - -
Ssu1g1409 154 CDD KOW_RPL27 6 88 IPR041991 -
Ssu1g1409 154 Pfam Ribosomal L27e protein family 52 125 IPR001141 GO:0003735|GO:0005840|GO:0006412
Ssu1g1409 154 Gene3D - 1 135 IPR038655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1409 Ssu-Chr1 31202774 31203238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1409 1 126 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 80.952 1.87e-71 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1409 K02901 - gmx:100793982 219.164