Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1408 ATGGCGCCGGCAGTCGGAGGCCTGCAGCTCACTTCCCTCGCCGGCGACCGGAGGCCCGCCGTCGGCGACTCCGATGACCTGGAGGACGTGCGGCTCTTGGACTCCTACGACGAAATCGACGCCGGAGTGAGGCGGATTCAGGTGACGGTCACCGGCATGACGTGCGCCGCCTGCTCCAATTCCGTCGAATCAGCTCTGAAATCCCTCGATGGCGTTATCAGCGCCTCCGTCGCACTGCTTCAGAACAAAGCCGACGTCGTTTTCAACCCGGCTCTGCTCAAGGATGAAGacataaaaaatgcaattgaaGATGCTGGGTTTGAAGCAGACATATTACCTGAATCCAGTGCAGTTGGAAAGATGCCACGTGGAACCCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAATATGATCCCAGTGTAATTAATAAAGATGATATAGTCAATGCAATTGAAGATTCTGGTTTTGAAGCTTCATTTGTACAAAGCAATGAGcaggataaaataattttaggggTGGTTGGTGTGTACAGTCTGATTGATGCACAAGTTTTAGAAGGCATTCTTAGCAGCACAAAAGGAGTAAGGCAGTTTCATTTTGATCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCTGAAGTTTTCAGTTCTAGATCTTTAGTTGATGCAATCCAGGGGGGAAGCGATGGAAAGTTTAAATTACATGTTAGAAGCCCTTATAAAAGGATGGCTTCTAAAGAAGTTGAAGAGACCTCAACTATATTTCGGCTCTTTATCTACAGTCTGTTTCTTAGtATTCCTCTCTTCTTCATGAGGGTAGTTTGTCCTCATATACCACTAATGTATTCCTTGTTACATCGTCGATGTGGACCTTTCCTTATGGGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATCCAATTTGTGATTGGTAAGCGCTTCTACATTGCAGCTAGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTGTGGGAACTACTGCTTCGTACGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTGTACTAGTTGTCAAAGATAAAGGTGGTAAATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATTCCTGCTGATGGCATAGTTACATGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCTGTACCTATTTTGAAGGAGGTGAATGCTTCCGTTATTGGTGGTACAATAAATTTGCATGGCGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATTATTAGTTTGGTTGAGACAGCCCAGATGGCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTTCGGTTGTTTCTTTGGCATTATTGACATTATTCGGTTGGTATATTGCCGGGTCTATTGGAGCTTACCCAGAAGAATGGCTACCAGAAAATGCAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTAGTGATTGCATGTCCCTGTGCGCTTGGCTTGGCAACACCAACAGCTATAATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCATTGTTACTACTGCCAAGACATTCACAGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCCTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAAAGCAATATTAGCATATGCACgccattttcatttctttgatGACTCTTCTGCTACTACTGGTACCGAAAATGATGCAAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTTCCTGGAAGAGGTGTTCAATGTTTTATAGACGGGAAGCGTATTTTGGTAGTTGGTAACAGGAAGTTGATGGAGGAAAATGGCATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTAGAGTTGGAAGAAAGTGCAAAGACAGGGATACTGGTAgcatataatgatatattaattggAGTCTTGGGGATTGCAGACCCACTAAAGAGAGAAGCTTCTGTAGTCATAGAGGGCCTCCAGAAAATGGGTGTCACACCTGTAATGGTTACAGGAGATAACTGGAGAACAGCTCATGCTGTTGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTTATGCCAGCGGGAAAAGCCGATGTTGTTCGTTCATTCCAAAAGGATGGGGGCATAGTCGCAATGGTGGGTGACGGTATCAATGATTCTCCTGCATTAGCTGCTGCCGATGTTGGTATGGCAATTGGGGCTGGAACTGACATTGCAATAGAAGCTGCTGACTATGTGCTGATGAGAAATAACTTGGAAGATGTGATCACAGCTATCGATCTTTCCCGGAAAACTTTTTCTCGTATTCGATTGAATTACGTGTTTGCAATGGCTTACAATGTTGTGGCTATACCAGTTGCTGCTGGTGTGTTTTATCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCAGGTGCATGCATGGCTCTCTCTTCTCTGCCAATTAATTGTAAATTGTACTTGGATTGTAATTGGTGTAGCACTCTCCCCCCTCCATCACGCTCAATTTCACTCGTCTTTATTTATGCGTAA 2994 0.4312 MAPAVGGLQLTSLAGDRRPAVGDSDDLEDVRLLDSYDEIDAGVRRIQVTVTGMTCAACSNSVESALKSLDGVISASVALLQNKADVVFNPALLKDEDIKNAIEDAGFEADILPESSAVGKMPRGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSSGEVEYDPSVINKDDIVNAIEDSGFEASFVQSNEQDKIILGVVGVYSLIDAQVLEGILSSTKGVRQFHFDQISGELDVLFDPEVFSSRSLVDAIQGGSDGKFKLHVRSPYKRMASKEVEETSTIFRLFIYSLFLSIPLFFMRVVCPHIPLMYSLLHRRCGPFLMGDWLKWALVSLIQFVIGKRFYIAASRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATAVLVVKDKGGKSIEEREIDSLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINLHGVLHIQATKVGSDTVLSQIISLVETAQMAKAPIQKFADYVASIFVPSVVSLALLTLFGWYIAGSIGAYPEEWLPENANHFVFALMFSISVVVIACPCALGLATPTAIMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKAIVTTAKTFTGMERGEFLKLVASAEASSEHPLAKAILAYARHFHFFDDSSATTGTENDAKSGWLFDVSDFSALPGRGVQCFIDGKRILVVGNRKLMEENGIDISTEVENFVVELEESAKTGILVAYNDILIGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTAHAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGGIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNVVAIPVAAGVFYPSLGIKLPPWVAGACMALSSLPINCKLYLDCNWCSTLPPPSRSISLVFIYA 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1408 997 Gene3D - 43 114 - -
Ssu1g1408 997 Gene3D - 128 193 - -
Ssu1g1408 997 PANTHER ATP7, ISOFORM B 19 974 - -
Ssu1g1408 997 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Ssu1g1408 997 PRINTS P-type cation-transporting ATPase superfamily signature 890 902 - -
Ssu1g1408 997 PRINTS P-type cation-transporting ATPase superfamily signature 814 824 - -
Ssu1g1408 997 PRINTS P-type cation-transporting ATPase superfamily signature 792 803 - -
Ssu1g1408 997 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Ssu1g1408 997 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Ssu1g1408 997 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Ssu1g1408 997 CDD HMA 129 192 IPR006121 GO:0046872
Ssu1g1408 997 SUPERFAMILY HMA, heavy metal-associated domain 124 198 IPR036163 GO:0046872
Ssu1g1408 997 SUPERFAMILY Calcium ATPase, transmembrane domain M 386 941 IPR023298 -
Ssu1g1408 997 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 363 968 IPR027256 GO:0006812|GO:0016021|GO:0019829
Ssu1g1408 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 736 949 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1408 997 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 402 670 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1408 997 TIGRFAM TIGR00003: copper ion binding protein 129 191 IPR006122 GO:0005507
Ssu1g1408 997 TIGRFAM TIGR00003: copper ion binding protein 46 109 IPR006122 GO:0005507
Ssu1g1408 997 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Ssu1g1408 997 Pfam E1-E2 ATPase 433 628 - -
Ssu1g1408 997 ProSiteProfiles Heavy-metal-associated domain profile. 127 193 IPR006121 GO:0046872
Ssu1g1408 997 Pfam Heavy-metal-associated domain 48 108 IPR006121 GO:0046872
Ssu1g1408 997 Pfam Heavy-metal-associated domain 130 190 IPR006121 GO:0046872
Ssu1g1408 997 SFLD p-type atpase 631 919 IPR044492 -
Ssu1g1408 997 SUPERFAMILY Calcium ATPase, transduction domain A 449 535 IPR008250 -
Ssu1g1408 997 Pfam haloacid dehalogenase-like hydrolase 645 881 - -
Ssu1g1408 997 ProSitePatterns Heavy-metal-associated domain. 50 80 IPR017969 GO:0046872
Ssu1g1408 997 Gene3D - 417 539 - -
Ssu1g1408 997 SUPERFAMILY HMA, heavy metal-associated domain 41 113 IPR036163 GO:0046872
Ssu1g1408 997 Gene3D - 748 798 IPR023299 GO:0000166
Ssu1g1408 997 Gene3D - 656 747 IPR023299 GO:0000166
Ssu1g1408 997 CDD HMA 47 109 IPR006121 GO:0046872
Ssu1g1408 997 ProSitePatterns Heavy-metal-associated domain. 132 161 IPR017969 GO:0046872
Ssu1g1408 997 PANTHER HEAVY METAL P-TYPE ATPASE 19 974 - -
Ssu1g1408 997 CDD P-type_ATPase_Cu-like 290 967 - -
Ssu1g1408 997 SUPERFAMILY HAD-like 648 967 IPR036412 -
Ssu1g1408 997 PRINTS H+-transporting ATPase (proton pump) signature 898 923 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1408 997 PRINTS H+-transporting ATPase (proton pump) signature 839 855 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1408 997 PRINTS H+-transporting ATPase (proton pump) signature 867 883 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g1408 997 Gene3D - 616 924 IPR023214 -
Ssu1g1408 997 SFLD C1.7: P-type atpase like 631 919 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1408 Ssu-Chr1 31166218 31174391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1408 1 963 Primary Pumps ATPases AT5G44790 74.592 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1408 K17686 - gmx:100804960 1765.36