Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1401 ATGCGTCAAAAATTTTCCTACACGATGGCTAAAACTCAGTCCCACACTCCCTTAGGCACACCCACTATTAGCCCCACCACAAGCAAACCACGCAACGCTCCAGAGCATGGCATCAATCTGATGGTTGTTTTGGCAGCCATTGTGTGTGCCTTCCTCTGCGCTCTTGGTCTTAACACAATGTTGCAATGTGTGCTCCAATGCGCCAATCGCGTCCTCACGGAGCCCCTTCGGTGGATTGCCTCACGCAGGCTCAACTCTGGCctcaagaagaaagaaatggtGGCTTTGCCAACCTCAACTTACACCCATTCTGGGTCTCCGTCTTCGGCCTCCAATTGTGCCATTTGCTTAGCAGAGTTCTCCGATGGGGACAAGATAAGGTTCCTCCCAAATTGCAATCACCGTTTCCATGTTGACTGCATTGATAAGTGGCTGCTTTCTCATTCTTCTTGCCCAACTTGTAGGAACTTGCTCAAGTCCAACGATTCACTGCACTCCTTGCATGTTGTAGTATCAtag 519 0.4798 MRQKFSYTMAKTQSHTPLGTPTISPTTSKPRNAPEHGINLMVVLAAIVCAFLCALGLNTMLQCVLQCANRVLTEPLRWIASRRLNSGLKKKEMVALPTSTYTHSGSPSSASNCAICLAEFSDGDKIRFLPNCNHRFHVDCIDKWLLSHSSCPTCRNLLKSNDSLHSLHVVVS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1401 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 164 IPR013083 -
Ssu1g1401 172 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g1401 172 Pfam Ring finger domain 112 155 IPR001841 -
Ssu1g1401 172 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 18 168 - -
Ssu1g1401 172 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Ssu1g1401 172 SMART ring_2 113 154 IPR001841 -
Ssu1g1401 172 PANTHER OS06G0666500 PROTEIN 18 168 - -
Ssu1g1401 172 SUPERFAMILY RING/U-box 112 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1401 Ssu-Chr1 31048950 31049468 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1401 18 158 C3H Transcription Factor Family AT3G10910 42.138 6.96e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1401 - K19040 gmx:100803003 290.041