Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1384 AtggcttcttcttttcctctttatcAACCAACCCACACCTTATTCTCCAACACCCAGTTCAAGGGTTCGCGCCGTGGCTTCTTGTGGCGACCCATTTACTCTTTTGGCTCACGTGTTGAAAACAAAGCACGACGCATCAAAGCTTTGGTTGATGCACCCCCATTTCCCCTGTTTCAGCCTCCCCAGGTTGAAGAGTCATCGTCTGAGTTGGAGCCTGCGGATCCTGATTTCTACAAGATCGGTTATGTCCGAAGCATGCGAGCTTATGGAGTTCAGTTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTTCCGTGGATGTTTTTCCCCGATATAATTCCCTTGGATCATCcaatatttgatattatcaACTCAACTAATCCAGAGACAGATTGGGACCTAAGGTTAGCATGCCTTCTCTTATATGCATTTGATTGTGAAGGCAACTTTTGGCAATTGTATGGTGACTTCTTACCGAGCGCAGATGAGTGCACTAGCTTACTTCTAGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCCAATCTTGCTTCCACTATTAGAAACCAGCAACAACGAGCCTTAAAATTCTGGGAGAATAACTGGCACAGTGCTGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCTCAAAGGTTCAGTTGGGCTGTAAGTATTGCACAGTCACGATGTATTAACATGCAAACGAGAATTGGTGCTCTAAATCAAGAAGCAAATATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAGCACATTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGTTCGCAGAAGAATGACATGTTCATGCAAAGATATGGATTTTCATCACCTGTGAATCCTTGGGATGTGATCAATTTCTCAGGCAATGCACGTATTCATTTGGATTCATTCTTGTCAATCTTCAATATATCTGGCCTTCCTGAAGAGTATTACCATAACAATTGTCTATCAAACGCTGGAGATACTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAACTTGGTCAGACAGGGATGTGCCCCCAATCCCTAGTGTGGAAAGAAAGGCTGCGAAGGAGTTGCAAAATGAATGCCAAAAGATGCTCGCAGAATTTGCTACAACCTCTAAGAAAGACCAGAAATTGCTAGGTAAATTTGACATTTGTATGCTTACGCTAAAAAGTAGAAACACAACTGATTgtcataataatttgtattttgcaATTTGCTTTGTGagaatatatatagttatatatcaTCCTGAAAATGGTATAGTTcgttctttgttttgttttagcaTAAGCCTGgaaacatttcttttatatcagTAA 1509 0.3903 MASSFPLYQPTHTLFSNTQFKGSRRGFLWRPIYSFGSRVENKARRIKALVDAPPFPLFQPPQVEESSSELEPADPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLACLLLYAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPNLASTIRNQQQRALKFWENNWHSAAPLKIKRLARDPQRFSWAVSIAQSRCINMQTRIGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQHIRKGDEMTVNYMSSQKNDMFMQRYGFSSPVNPWDVINFSGNARIHLDSFLSIFNISGLPEEYYHNNCLSNAGDTFVDGAVIAAARTLPTWSDRDVPPIPSVERKAAKELQNECQKMLAEFATTSKKDQKLLGKFDICMLTLKSRNTTDCHNNLYFAICFVRIYIVIYHPENGIVRSLFCFSISLETFLLYQ 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1384 502 PANTHER PROTEIN PLASTID TRANSCRIPTIONALLY ACTIVE 14 51 444 - -
Ssu1g1384 502 Coils Coil 417 437 - -
Ssu1g1384 502 Pfam SET domain 99 322 IPR001214 GO:0005515
Ssu1g1384 502 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 444 - -
Ssu1g1384 502 CDD SET_LSMT 90 337 - -
Ssu1g1384 502 SUPERFAMILY SET domain 98 338 IPR046341 -
Ssu1g1384 502 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 449 IPR036464 -
Ssu1g1384 502 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Ssu1g1384 502 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu1g1384 SET 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1384 - - gmx:100786962 850.506