Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1376 atgtCCAACTCTTCCCTTCCATTGCTTCTTCTGTTGGTTCTTCAAATAATTTCAGCCTCAGCCCAGCCTCATGAAAACTCTGACTATAAGCCATCCCCTTCTACAGGTGACACTGTCTTCTCTCTCCAAGTCCCAACATTAGATGAAACCACCTTCGACAATCTTCTATCCTTTGGTTACTACCGTAAAACCTGCCCCCAATTCGAATCCATCCTACACAACAAAGTGAAAGAATGGATCCAGAAGGACTACACTTTAGCAGCGAGTCTCCTGAGGCTCCACTTCCATGATTGTGCTGTCAGGGGATGTGATGGGTCCATTTTGTTGAACCATGATGGCAGTGAGAGGACAGCACAGGCTAGCAAGACACTGAGAGGGTTCGAAGTGGTGGATGATATCAAGGCAGAGTTGGAGAAACAATGCCCCAAGACGGTGTCTTGTGCTGACATTCTAACCGCTGCTGCAAGGGATGCCACGGTTGAGTTAGGTGGGCCTTATTGGGCAGTTCCTTATGGTAGAAAAGACGGGAAGGTCTCCATTGCTAAGGAAGCTGAAATGGTGCCTATGGGCCATGAAAACATTACTTCCTTGATTGAGTTTTTCCAATCTAGGGGCATGACTGTGCTTGACTTAGTTGTTCTCTcagGGGCTCACACTATTGGAAGGACTTCATGTGGCTCCATTCAAAATAGGCTGTACAACTACCAAGGAACAGGCAAACCAGACCCAATCCTACATCCCAAGTATGTTAACTTCTTGCAAAGGAAGTGTAGATGGGCCGCGGAGTATGTGGATCTTGATGCTACAACACCAAAGACCTTTGACAACGTGTACTACAttaatctaaagaaaaaaatggggtTGTTATCTACAGATCAGTTGTTATATTCTGATCCAAGGACTTCTCCCCTTGTTTCTGCATTGACTGCCGCGCACTCTGTTTTTGAGCACCAGTTTGCGGTGTCCATGGGAAAGCTAGGCATTGTTGATGTTCTCACGGGCCAGGATGAAGGAGAAATCAGGACCAACTGCAATTTTGTCAATGCCTATTGA 1053 0.452 MSNSSLPLLLLLVLQIISASAQPHENSDYKPSPSTGDTVFSLQVPTLDETTFDNLLSFGYYRKTCPQFESILHNKVKEWIQKDYTLAASLLRLHFHDCAVRGCDGSILLNHDGSERTAQASKTLRGFEVVDDIKAELEKQCPKTVSCADILTAAARDATVELGGPYWAVPYGRKDGKVSIAKEAEMVPMGHENITSLIEFFQSRGMTVLDLVVLSGAHTIGRTSCGSIQNRLYNYQGTGKPDPILHPKYVNFLQRKCRWAAEYVDLDATTPKTFDNVYYINLKKKMGLLSTDQLLYSDPRTSPLVSALTAAHSVFEHQFAVSMGKLGIVDVLTGQDEGEIRTNCNFVNAY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1376 350 Pfam Peroxidase 74 308 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 ProSitePatterns Peroxidases active site signature. 87 98 IPR019794 GO:0004601
Ssu1g1376 350 PANTHER PEROXIDASE 49 347 - -
Ssu1g1376 350 SUPERFAMILY Heme-dependent peroxidases 56 348 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 321 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 144 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 209 221 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 281 298 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 65 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 89 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 125 138 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 163 178 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Plant peroxidase signature 265 280 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 Gene3D - 59 348 - -
Ssu1g1376 350 PRINTS Haem peroxidase superfamily signature 87 101 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Haem peroxidase superfamily signature 210 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Haem peroxidase superfamily signature 145 162 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Haem peroxidase superfamily signature 163 175 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PRINTS Haem peroxidase superfamily signature 267 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 PANTHER PEROXIDASE 25-RELATED 49 347 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 Gene3D Peroxidase, domain 2 188 326 - -
Ssu1g1376 350 CDD secretory_peroxidase 56 347 IPR033905 GO:0004601|GO:0042744
Ssu1g1376 350 ProSiteProfiles Plant heme peroxidase family profile. 55 348 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1376 350 ProSitePatterns Peroxidases proximal heme-ligand signature. 210 220 IPR019793 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1376 Ssu-Chr1 30093428 30095276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1376 52 349 Peroxidase AT1G30870 59.667 4.73e-132 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1376 K00430 - gmx:100527587 624.78