Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1375 ATGATAACTCGGGTGCAAGTGGTGGGACTCAACCTGTCCGAGTCATCACTCAGTGGGTCAATGTCACCCACACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCTTCTAACCGCCTCACGGGTCCCATTCCACCGACCCTCTCCACCCTCACTTCTTTGGagtctctctttctctactCTAACCAGCTCACGGGTCACATCCCCACCGAGTTCGACTCGCTACTGAGTCTCCGAGTTTTGCGAATCGGCGACAACGAACTCACTGGCCCAATTCCCGCGTCACTTGGGAATCTTGTCAAGCTTGAGTACCTCGGTTTAGCCTCATGCAGACTCACTGGTTCGATTCCACCCCAACTCGGTCGACTCAGTGAGTTGGAATATCTGATCCTTCAGGAAAACGGGCTGACTGATCCGATTCCGTCCGAGTTGGGCAACTGCTCGAGCCTTATAGTCTTCACCGCTGCTGGCAACAGACTCACTGACTCGGTACCGAGTGAGCTGAGTCAACTCAGTAAACTTCAAACTCTGAACCTTGCCAACAACAGCTTAACCGGGTCAATTCCGAGTCAACTCGGTGAGCTGAGTGAGCTTAGATATCTGAATTTCATGGGGAACAAGCTCGAGGGTCTTATTCCACCGTCCTTGGCTCAACTGGGTGACCTTCAAAATCTTGACTTGTCCAAGAACATGCTCAGTGGGGAAATTCCAGAGGAGTTAAGAAACATGGGTGAGTTACAATACTTGGTTCTCTCTGGGAACAACCTCTATGGGACCATTCCAAGAACCATATGTTCCAATGCAACAAGTTTGGAGATCTTAATGATGTCTGATAGTGGACTTCATGGTGAGATACCAGCTGAGTTGGGTCAGTGCAAATCACTGAAACAACTTGATTTGTCAGGCAATTTTCTCAATGGATCAATACCTATTGAGATTTATGGGTTGCTGGGGCTAACTGATCTCTTTCTTCACAACAACAGCTTGGTTGATTCAATCTCTCCCTTCATAGGGAACCTCACTAACATGCAGACACTTGCATTGTATCACAACAATTTGCAGGGTGGTCTCCCCAGAGAGATTGGGAGGCTTCGGAAATTGGAGATACTGTATCTCTATGATAATCTGTTCTCAGGGAAGATTCCTTTGGAGATTGGAAACTGCTCAAGCTTGCAAATGGTGGATTTCTATGGAAACCATTTCAGTGGGGGAATTCCCTTCACTATTGGAAGGCTGAAAGAGTTGAATTTTCTGCACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCTCCCACAGTTGGTAATTGTTATAAACTGACTGTCCTGGATTTGGCAGATAATCGGCTCTCAGGTGGCATTCCTGCAACATTTGGATTCCTCAGAGAGTTGAAGCAGTTCATGCTCTACAACAATTCTCTTGAAGGTAGTCTTCCTGATCAACTTGTAAATGTAGCAAACTTGACCACAGTGAATCTTTCAAAGAACAGACTGAATGGTAGTTTGGCTGCATTGTGTAGCTCGAggtcctttctttcttttgatgtcACAGATAATGAATTTGATGGTGAAATACCCATTCTCCTGGGAAATTCGCCTTCCCTTAAAAGGCTGAGATTGGGTAACAACAAATTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCACTATGTTATCATTGTTAGACCTCTCGGGAAATTCACTCACAGGACTAGTTCCAGATGAGCTTTCTTTGTGTAATAATCTGACTCACATTGATTTAAACAATAACCTTCTATCTGGACACATGCCATCATGGCTTGGAAGTTTGCCTCAGTTGGGAGAGATTAAGCTCTCGTTCAATCAATTTTATGGGTCTATTCCACTAGGCCTATTCAAACAACCCAAGTTGCTGGTTCTTTCCTTGAATGACAATTCTCTTAATGGAAGTCTCCCAGGAGATATTGGTGGTCTTCAATCTCTTAATATCCTCAGACTTGATCATAATAACTTCACTGAACGAATCCCTCATGCAATAGGTGAATTGAGAAATCTTTATGAGCTGCAGCTATCCAGCAATAGCTTTAGTGGTGAGATACCAATTGAGATTGGAAATCTCCAAAATCTGCAAAGCATTTTGGACCTCAGTTACAATAATCTCTCTGGTCATATCCCATCTTCACTTAGCATGCTGTCAAAATTGGAAGTACTTGATCTTTCTCACAATCAACTCACTGGAGAAGTGCCTTCAGTAGTTGGTGAAATGAGGAGCTTGGAGAAGCTTGACATCTCTTTCAATAACCTTCAAGGTGCACTGGATAAGCAATTCTCCCGCTGGCCACACGAGGCATTTGAAGGGAACCTTCATCTCTGTGGAGCCTCTCTTGGAAGCTGCAACCATGGTGGTGCTTCCCGCAATAAGCCATCAGGCTTAAGCAACACATCAGTGGTTATTGTCTCTGCACTTTCAACTTTAGCTGCAATTGCTCTACTAATACTTGCAGTGATCATCTTCTTGAGAAACAAGCAAGAATTTTTCAGGAGAGGCAGTGAAGTGAGTTttgttttctcctcttcatcacGAGCACAAAGACGATCGCTGATCCCTCTAACTGCTCCTGGAAAGCGAGATTTCAGGTGGGAAGACATCATGGATGCCACAAACAATCTAAGTGATGAGTTCATAGTTGGTTGTGGAGGTTCTGGGACAGTGTACAGAGTTGAATTCCCCACTGGAGAGACTGTGGCTGTGAAGAAAATTTCATGGAAAGATGATTATATGTTGAACAAAAGCTTTATAAGAGAAATCAAGACTTTAGGGAGGATCAAGCACAGGCATCTGGTGAAACTGATAGGTTGTTGTAGCAATAGAAACAAAGGAGCAGGTTGGAATCTGTTGATATATGAGTATATGGAGAATGGGAGTGTATGGGATTGGCTACATGGGGAACCCCTCAAGGCAAGCAAAGCAAAGGGGAGCCTTGATTGGGACACAAGGTTCAAAATAGCTGTGGGATTAGCTCATGGAGTGGAGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAACATATTGCTAGATTCCAACATGGAGGCGCACTTGGGAGACTTTGGACTGGCCAAAACACTCATCGAGGATCATGAATCTAATACTGAGTCTAATTCTTGTTTTGCTGGCTCTTATGGTTACATAGCCCCAGagTATGCATACACACTGAAGGCCACTGAGAAAAGTGATGTGTACAGCTTGGGAATTGTGCTTATGGAACTTGTTAGTGGTAAAATGCCAACAGATGCAGCTTTCAGAGCAGAAATGGACATGGTGAGATGGGTGGAGATGCACCTTGACATGCAAGGCACTGCACGTGAGGAAGTGATAGCTCCTGAGCTGAGACCCCTTTTGCCTGGTGAAGAGTTTGCTGCATTGCAGGTGCTTGAGATAGCCATACAGTGCACAAAAACTGCACCACTGGAGAGGCCAACGTCACGACAAGTGTGCGATCTTCTTCTGCGAGTATCCAACAACAGAAAGGTGGAGTTTGAGAAGACGAATTTGGATCAATACTAG 3570 0.4401 MITRVQVVGLNLSESSLSGSMSPTLGRLQNLLHLDLSSNRLTGPIPPTLSTLTSLESLFLYSNQLTGHIPTEFDSLLSLRVLRIGDNELTGPIPASLGNLVKLEYLGLASCRLTGSIPPQLGRLSELEYLILQENGLTDPIPSELGNCSSLIVFTAAGNRLTDSVPSELSQLSKLQTLNLANNSLTGSIPSQLGELSELRYLNFMGNKLEGLIPPSLAQLGDLQNLDLSKNMLSGEIPEELRNMGELQYLVLSGNNLYGTIPRTICSNATSLEILMMSDSGLHGEIPAELGQCKSLKQLDLSGNFLNGSIPIEIYGLLGLTDLFLHNNSLVDSISPFIGNLTNMQTLALYHNNLQGGLPREIGRLRKLEILYLYDNLFSGKIPLEIGNCSSLQMVDFYGNHFSGGIPFTIGRLKELNFLHLRQNELVGEIPPTVGNCYKLTVLDLADNRLSGGIPATFGFLRELKQFMLYNNSLEGSLPDQLVNVANLTTVNLSKNRLNGSLAALCSSRSFLSFDVTDNEFDGEIPILLGNSPSLKRLRLGNNKFSGEIPRTLGKITMLSLLDLSGNSLTGLVPDELSLCNNLTHIDLNNNLLSGHMPSWLGSLPQLGEIKLSFNQFYGSIPLGLFKQPKLLVLSLNDNSLNGSLPGDIGGLQSLNILRLDHNNFTERIPHAIGELRNLYELQLSSNSFSGEIPIEIGNLQNLQSILDLSYNNLSGHIPSSLSMLSKLEVLDLSHNQLTGEVPSVVGEMRSLEKLDISFNNLQGALDKQFSRWPHEAFEGNLHLCGASLGSCNHGGASRNKPSGLSNTSVVIVSALSTLAAIALLILAVIIFLRNKQEFFRRGSEVSFVFSSSSRAQRRSLIPLTAPGKRDFRWEDIMDATNNLSDEFIVGCGGSGTVYRVEFPTGETVAVKKISWKDDYMLNKSFIREIKTLGRIKHRHLVKLIGCCSNRNKGAGWNLLIYEYMENGSVWDWLHGEPLKASKAKGSLDWDTRFKIAVGLAHGVEYLHHDCVPKIIHRDIKSSNILLDSNMEAHLGDFGLAKTLIEDHESNTESNSCFAGSYGYIAPEYAYTLKATEKSDVYSLGIVLMELVSGKMPTDAAFRAEMDMVRWVEMHLDMQGTAREEVIAPELRPLLPGEEFAALQVLEIAIQCTKTAPLERPTSRQVCDLLLRVSNNRKVEFEKTNLDQY 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1375 1189 Gene3D Ribonuclease Inhibitor 2 117 IPR032675 -
Ssu1g1375 1189 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1015 1027 IPR008271 GO:0004672|GO:0006468
Ssu1g1375 1189 ProSitePatterns Protein kinases ATP-binding region signature. 890 913 IPR017441 GO:0005524
Ssu1g1375 1189 ProSiteProfiles Protein kinase domain profile. 884 1171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1375 1189 SUPERFAMILY RNI-like 10 332 - -
Ssu1g1375 1189 Gene3D Ribonuclease Inhibitor 118 210 IPR032675 -
Ssu1g1375 1189 SMART LRR_typ_2 28 51 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 461 485 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 749 780 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 172 196 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 365 389 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 652 676 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 244 268 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 124 148 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 556 579 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 52 75 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 604 628 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 220 243 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 725 748 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 317 341 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 76 100 IPR003591 -
Ssu1g1375 1189 SMART LRR_typ_2 413 437 IPR003591 -
Ssu1g1375 1189 Pfam Leucine Rich Repeat 30 51 IPR001611 GO:0005515
Ssu1g1375 1189 Pfam Leucine Rich Repeat 174 193 IPR001611 GO:0005515
Ssu1g1375 1189 PRINTS Leucine-rich repeat signature 725 738 - -
Ssu1g1375 1189 PRINTS Leucine-rich repeat signature 559 572 - -
Ssu1g1375 1189 Gene3D Ribonuclease Inhibitor 211 312 IPR032675 -
Ssu1g1375 1189 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 5 1187 - -
Ssu1g1375 1189 SMART serkin_6 884 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1375 1189 Pfam Protein kinase domain 889 1167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1375 1189 Gene3D Transferase(Phosphotransferase) domain 1 965 1188 - -
Ssu1g1375 1189 SUPERFAMILY L domain-like 226 573 - -
Ssu1g1375 1189 SUPERFAMILY L domain-like 515 788 - -
Ssu1g1375 1189 Pfam Leucine rich repeat 706 762 IPR001611 GO:0005515
Ssu1g1375 1189 Pfam Leucine rich repeat 439 498 IPR001611 GO:0005515
Ssu1g1375 1189 Pfam Leucine rich repeat 54 113 IPR001611 GO:0005515
Ssu1g1375 1189 Pfam Leucine rich repeat 198 257 IPR001611 GO:0005515
Ssu1g1375 1189 Gene3D Phosphorylase Kinase; domain 1 844 964 - -
Ssu1g1375 1189 Gene3D Ribonuclease Inhibitor 459 795 IPR032675 -
Ssu1g1375 1189 Gene3D Ribonuclease Inhibitor 313 458 IPR032675 -
Ssu1g1375 1189 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 5 1187 - -
Ssu1g1375 1189 SUPERFAMILY Protein kinase-like (PK-like) 861 1170 IPR011009 -
Ssu1g1375 1189 ProSiteProfiles Leucine-rich repeat profile. 727 749 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1375 Ssu-Chr1 30080642 30084305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1375 4 626 Receptor kinase-like Gene Family AT5G56040 38.179 2.18e-99 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g1375 Pkinase 5.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1375 - - gmx:100797153 1902.49