Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1373 ATGGCAAAAAGCAGTAATGATGAGACAGTGAATGAGGAAGAGTCAAGTAACCAGCAGTATGCAGAAACCAGTTACGAGGAGAAATTAGAAGAAGAGGCAAGTAATCAGAACTATGCTGAAAGTAGTTATGATGAAGAGATGGTGGATGAGGTAGAGGACATTGACCAGAATTGTGATGAAACTAATTATGACTGGATCAGTGAAATTTCTCGGCCTCGGAGCTATTGGGAAGAACTCAGGCAAGCATGGTATAGAGAGATGCTTGAAACTGGTTCTCACAATGAAGATATACGGAAGCTTCTTGAAAGAAGAACAGTGTCAAGTTTCCTTTCTAGTGACTTCCGGGACAGAATGGATAGATTGATGGAATCTCATAGGGGAACACAAGCACATTTAGTCAATAGTCAAGATCATGAGGAAGACAGCCAAGGGTTGATGGCATTTTTACAAGAACGCTTGCATTCTGCAAGAGAGTCTCAAGATGATGGAAGAGATGCGGGggaggaagaagaggaggaaaggaGAAATCAGgatgaggaagaggaagaagaggaggaggatAATGCAGATGAGCAGGAGCATGAGCATGAGGAGGAGAGCTTGATAAGTGGTTCATATCATGAAGCTGGCGATTATTCTAATCGATCCTCATCATGGAGTTACAGGGACAATGAAGCTGGTGATGATTTTGATAGAGGTGTTTCTACATCCCCACAACCTTATCAATCTCAATCTTTCTATCAGGATAGTCGGCACTCTCCATCCACCAATCATCATTCAATTGAAATGGAACTCATATATGTTTTGAGAGGGCAAATGGAGCAACTTTATCATGAGATATCTGAGCTAAGGAAATCAATAAAGGGCTGCATGGATATGCAGATGCAATTACAACAATCCATGACCCCAGAGGTTCACACAGGTTTGTttaaaaaagaagaaaagaagtcCCATAACAGGGACCCCAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTTGACTCGGTTTTGTACAGGTGTGGACACATGTGTACGTGTCTCAAGTGTGCCAACGAGTTGCAATGGAACAGTGGAAAATGTCCTATATGTCGAGCTAAAATAGTGGATGTTGTTCGAGTATATGTTGACGGTTAG 1140 0.393 MAKSSNDETVNEEESSNQQYAETSYEEKLEEEASNQNYAESSYDEEMVDEVEDIDQNCDETNYDWISEISRPRSYWEELRQAWYREMLETGSHNEDIRKLLERRTVSSFLSSDFRDRMDRLMESHRGTQAHLVNSQDHEEDSQGLMAFLQERLHSARESQDDGRDAGEEEEEERRNQDEEEEEEEEDNADEQEHEHEEESLISGSYHEAGDYSNRSSSWSYRDNEAGDDFDRGVSTSPQPYQSQSFYQDSRHSPSTNHHSIEMELIYVLRGQMEQLYHEISELRKSIKGCMDMQMQLQQSMTPEVHTGLFKKEEKKSHNRDPKKGNCCICYEMKVDSVLYRCGHMCTCLKCANELQWNSGKCPICRAKIVDVVRVYVDG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1373 379 ProSiteProfiles Zinc finger RING-type profile. 327 366 IPR001841 -
Ssu1g1373 379 Pfam Zinc finger, C3HC4 type (RING finger) 324 371 - -
Ssu1g1373 379 MobiDBLite consensus disorder prediction 1 47 - -
Ssu1g1373 379 PANTHER BNAC05G24000D PROTEIN 7 378 - -
Ssu1g1373 379 CDD mRING-HC-C3HC5_NEU1 326 366 - -
Ssu1g1373 379 MobiDBLite consensus disorder prediction 207 221 - -
Ssu1g1373 379 MobiDBLite consensus disorder prediction 235 254 - -
Ssu1g1373 379 SUPERFAMILY RING/U-box 326 372 - -
Ssu1g1373 379 SMART ring_2 327 365 IPR001841 -
Ssu1g1373 379 MobiDBLite consensus disorder prediction 164 194 - -
Ssu1g1373 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 378 IPR013083 -
Ssu1g1373 379 PANTHER BNAC05G24000D PROTEIN 7 378 - -
Ssu1g1373 379 Coils Coil 166 199 - -
Ssu1g1373 379 MobiDBLite consensus disorder prediction 154 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1373 Ssu-Chr1 30034141 30036305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1373 327 375 C3H Transcription Factor Family AT3G06140 40.816 3.33e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1373 - - gmx:100796661 574.318