Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g1367 | ATGGAAGCATATGGCGGGTTCTTGGTCGATGAGAAAGCCGTTAGGGTTGAGAACGCTTTCTTAGATTTTCTCAAAAGCTTCAAATCTGGCCAGCGGAACGAACTCCATTACGAAGCGGAGATCGAAGTGATGAGAGCCAACGAATCCAACACCATGTTCATCGATTTCGACCACGTCATCAGATTTAGTGACGTCCTCCAACAAGCCATCTCTGATGAATATTTGaggtttttatttgtttctcaaaacccttttttattttttaagagtttcgGCACTGAGACTTGTTTTCGTGTTTATTGTAGGTTTGAACCTTACTTGAAGAACGCTTGCAAGAGGTTTGTTATGGACCTCAGGCCAACCATCATGTCCGATGACAACCCTAACAAAGACATTAACATTGCATTTTATAACATTCCGATCATTAAAAGGTTAAGAGAATTGGCTACTTCAGAAATTGGAAGGCTTGTCTCTGTGACAGGAGTGGTGACGAGGACAAGTGAGGTTCGACCTGAACTTCTCCAAGGAACTTTCAAGTGCTTGGAATGTGGTGGCGTTATAAAGAACGTTGAACAGCAGTTCAAATATACTGAGCCAACAATTTGTGTAAATGCTACCTGTAGCAATCGAACAAGGTGGGCACTGCTGCGCCAAGATAGTAAATTTGCTGACTGGCAAAGGGTCAGAATGCAGGAGACGTCCAAAGAGATACCCGCAGGCTCCCTTCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTAGAACAGGCCAGGGCTGGTGACACGGTAATTTTTACAGGTACTGTAGTTGTTATACCTGACATATTGGCATTGGCCTCTCCTGGGGAGAGATCAGAGTGCCGTCGGGACCCTTCTCAACGCAAGGGTCCTGCAGCTGGAAATGAAGGTGTGAGTGGCCTTAAGGCTCTGGGAGTCAGAGACCTCTCCTATCGTCTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGACATCAGGAATAGAAAGAAGGATGCTGATGAAGATGATCAACTGTTCACTGAACAGGAATTGGATGAAATTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTAGTTGAAAGCGTTGCTCCAACTGTTTTTGGTCATCCAGATATAAAGAGAGCAATCCTTCTTATGCTTATGGGTGGTGTCCACAAATTTACTCATGAAGGCATTAACCTCAGAGGAGACATAAACATTTGTGTTGTCGGAGATCCCAGCTGTGCAAAGTCTCAATTTCTTaaGTATACTTCAGGCATAGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGCGCTTTGATGCTTGCAGACAATGGCGTTTGCTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCTGCTGCCAATCCTGCTGGGGGACGCTATGATAAGTCTAAACCCCTTAAGtaCAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTTGATCTCGTATATGTTATGATTGATGACCCAGATGATCAGACAGATTATCACATAGCTCATCATATTGTGCGAGTTCATCAAAAGCGTGAAGGTGCTCTTACTCCAGCATTCACTACAGCAGAAGTGAAGCGTTATATAGCTTATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCTAGAAAACTACTGGTAGACTCTTATGTTGCTCTCCGAAGGGGTGATACAAATCCTGGGAGTAGGGTTGCTTATCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCGGAGGCCATTGCACGGTGTCATTTGGAAAATCAGGTACAACCTCGTCATGTTCGTCTAGCAGTGAAACTGCTGAAAACTTCCATAATAAGTGTGGAGTCCAGTGAGATTGATCTATCTGAGTTTCAAGAAGAAAACCGGGACGATGACACAGGTAGTGGTGAtggaaatgataataatagagATGCTAATGATCAAATGGGAAACAGTACAGCTCAGCAAGCTGATGGAAATCCAGCGGAAGGATCTAACTCCCAAAGAATTGATGATGGAAATCCAGCAGATGGACCTAATCCCCAAGGGAAAAAACTCATTATAAGTGAGGAGTATTTTCAGAGAGTTACCAGGGCCCTTATCATGTGTCTTAGACAGCACGAAGAAGgAAATGGTCTGGCTGGGATGAGGCAACGAGATTTGATTCAATGGTACGTAAACCAGCAAAATGAGAGAAACAATTACAGTAACATGGAAGAGTTGGCAGCTGAAGTTTCCAGAATTAAAGCTATTATAGagTGCTTAATTCGAAGAGAGGGCTATTTGATAGTAGTAGATGATGGGCAAGCTGCAGCAGCAGAAGGTGCAGGGTCAGCTAGAAATGACCGAATTTTAGTGGTGGCTCCTAATTATGTCATTGATTGA | 2589 | 0.4253 | MEAYGGFLVDEKAVRVENAFLDFLKSFKSGQRNELHYEAEIEVMRANESNTMFIDFDHVIRFSDVLQQAISDEYLRFLFVSQNPFLFFKSFGTETCFRVYCRFEPYLKNACKRFVMDLRPTIMSDDNPNKDINIAFYNIPIIKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICVNATCSNRTRWALLRQDSKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVVIPDILALASPGERSECRRDPSQRKGPAAGNEGVSGLKALGVRDLSYRLAFIANSVQICDGRRETDIRNRKKDADEDDQLFTEQELDEIQRMRNTPDFFTKLVESVAPTVFGHPDIKRAILLMLMGGVHKFTHEGINLRGDINICVVGDPSCAKSQFLKYTSGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGVCCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDDQTDYHIAHHIVRVHQKREGALTPAFTTAEVKRYIAYAKTLKPKLTSDARKLLVDSYVALRRGDTNPGSRVAYRMTVRQLEALIRLSEAIARCHLENQVQPRHVRLAVKLLKTSIISVESSEIDLSEFQEENRDDDTGSGDGNDNNRDANDQMGNSTAQQADGNPAEGSNSQRIDDGNPADGPNPQGKKLIISEEYFQRVTRALIMCLRQHEEGNGLAGMRQRDLIQWYVNQQNERNNYSNMEELAAEVSRIKAIIECLIRREGYLIVVDDGQAAAAEGAGSARNDRILVVAPNYVID | 862 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g1367 | 862 | Pfam | MCM6 C-terminal winged-helix domain | 752 | 861 | IPR041024 | - | |
| Ssu1g1367 | 862 | ProSitePatterns | MCM family signature. | 478 | 486 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Ssu1g1367 | 862 | Gene3D | - | 750 | 862 | - | - | |
| Ssu1g1367 | 862 | Gene3D | - | 8 | 141 | - | - | |
| Ssu1g1367 | 862 | Pfam | MCM N-terminal domain | 18 | 78 | IPR027925 | - | |
| Ssu1g1367 | 862 | Pfam | MCM AAA-lid domain | 595 | 679 | IPR041562 | - | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 470 | 484 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 498 | 511 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 549 | 557 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 522 | 534 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 410 | 425 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 275 | IPR012340 | - | |
| Ssu1g1367 | 862 | SMART | mcm | 141 | 680 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | MobiDBLite | consensus disorder prediction | 690 | 754 | - | - | |
| Ssu1g1367 | 862 | Pfam | MCM P-loop domain | 357 | 579 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | ProSiteProfiles | MCM family domain profile. | 369 | 575 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 379 | 680 | IPR027417 | - | |
| Ssu1g1367 | 862 | Gene3D | - | 172 | 223 | - | - | |
| Ssu1g1367 | 862 | Pfam | MCM OB domain | 145 | 273 | IPR033762 | - | |
| Ssu1g1367 | 862 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 817 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Ssu1g1367 | 862 | MobiDBLite | consensus disorder prediction | 283 | 304 | - | - | |
| Ssu1g1367 | 862 | Coils | Coil | 806 | 826 | - | - | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 100 | 112 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 142 | 154 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 245 | 256 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 192 | 209 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Ssu1g1367 | 862 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 304 | 325 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Ssu1g1367 | 862 | Gene3D | - | 145 | 273 | IPR012340 | - | |
| Ssu1g1367 | 862 | Gene3D | - | 350 | 697 | IPR027417 | - | |
| Ssu1g1367 | 862 | CDD | MCM6 | 372 | 678 | - | - | |
| Ssu1g1367 | 862 | MobiDBLite | consensus disorder prediction | 707 | 741 | - | - | |
| Ssu1g1367 | 862 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 10 | 817 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g1367 | Ssu-Chr1 | 29908629 | 29913861 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g1367 | 1 | 862 | Core DNA Replication Machinery Family | AT5G44635 | 68.106 | 0.0 | 1243 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g1367 | K02542 | - | gmx:100787290 | 1420.6 |