Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1363 ATGTTCGGTCAGGGCATGGATTCTGCAAGGGATGCGGGTGGTTTGGCAGGGACAGTGCTAATTCCCATGCGTTTTGTGTGGCCATATGGAGGAAGGAGTGTCTTTCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTGCCAATGTCGCCGGTGGAAGGTTGTCCAACTGTGTTTCAAGTTATTTATAACTTGCCCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTTATGTACCTGGAGAATATGGGATAGTCAACACTGTCTTCTTGGCCACTGATCCTAACTACATGCCTGTTTTAACTCCAGATGTTGCTTCTGGAAATAGCATGGATGTGGATAATGAGGCTTTTCGCCGAGTGGTCCGATTGACCGATGGTACATTGAGTGAGGTGCTGCCAAGAATATCAGATACTGATGTACAGATCACCTGTCAGCGTATTTCTGCATTTCTGTCTTCACACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCAGTGAAACAGGCATTTCATATACTGCATGAGCAGGGAATTTTCATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGTgctttggattttattttaattttaagagagCTGGGGAATCATGGGTCCAATCTGACAGAAGAGGAGCTTGAAACACATACCATATCAGCCTGGAAAGAAGGAAAGTCGTACCTAAATAGACAGAACAATGAACATGGAACTGCATTTTCAAGATGTTTTATCcatGCAGGGCCATATGATAATCTGAAAGACATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCACCTTCTGAAGATGCTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGAACTGCTCTAGTTCCCTGCCTGTACTTCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATTGGGGAATCAAATCGGCGGCCTCTAGCAATGTTGAGACCAACTGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTCGATGATAACGACTCATTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCAAAGAACAGAGCATATACACACATTAATCTTGATGAAATGACTGTTCATCAGGCTTTGCAGTTAGGCCAGGACGCATATAGCCCCTACGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGTTTGGCAAATCCAGGTGTCAGGCGGCTTGTCATCGTGGAAGCCGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTCCTTGGTGGTTAG 1476 0.4309 MFGQGMDSARDAGGLAGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVFLATDPNYMPVLTPDVASGNSMDVDNEAFRRVVRLTDGTLSEVLPRISDTDVQITCQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWKEGKSYLNRQNNEHGTAFSRCFIHAGPYDNLKDIAMKILQKEVSTVPIIHSPSEDASFPQLLHLASLSGILKCICRYFRNCSSSLPVLQLPICAIPVGTWVPKIGESNRRPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1363 491 CDD E_set_AMPKbeta_like_N 22 100 - -
Ssu1g1363 491 Gene3D - 148 330 IPR046342 -
Ssu1g1363 491 ProSiteProfiles CBS domain profile. 354 411 IPR000644 -
Ssu1g1363 491 ProSiteProfiles CBS domain profile. 436 491 IPR000644 -
Ssu1g1363 491 Gene3D - 346 490 IPR046342 -
Ssu1g1363 491 Pfam CBS domain 443 489 IPR000644 -
Ssu1g1363 491 Pfam CBS domain 356 402 IPR000644 -
Ssu1g1363 491 SUPERFAMILY E set domains 21 102 IPR014756 -
Ssu1g1363 491 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Ssu1g1363 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 11 490 - -
Ssu1g1363 491 SUPERFAMILY CBS-domain pair 355 490 IPR046342 -
Ssu1g1363 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
Ssu1g1363 491 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 11 490 - -
Ssu1g1363 491 SUPERFAMILY CBS-domain pair 156 327 IPR046342 -
Ssu1g1363 491 Gene3D Immunoglobulins 21 111 IPR013783 -
Ssu1g1363 491 SMART cbs_1 358 406 IPR000644 -
Ssu1g1363 491 SMART cbs_1 440 489 IPR000644 -
Ssu1g1363 491 SMART cbs_1 176 225 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1363 Ssu-Chr1 29874824 29889321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1363 11 129 Protein tyrosine phosphatase (PTP) family AT3G01510 28.125 5.43e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1363 - - gmx:100781819 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0301 6 4786970 4798045 Ssu1g1363 1 29874824 29889321 PCT