Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1359 ATGTTTCGTTTCCAACCCTTCAAACCCCTCCTTCTCTATCTGAAGTCACACACAAGAACACCGCTTCAAACCCCGAAACCCAATCCTCTTCCCTCGGCACTCTCTCTGAAACACATCTCACTCGCTTCCGAACAACACTCATTCACGGTTTCCTACCTCGTAAACAACTGCGGCTTCTCCCCGGAAACCGCTCTCAAGGCTTCCGAGCGCGTCCGTTTCGAGACCCCTCAAAAGCCCGACTCAGTAATCGCTTTCTTCAGAGACAACGGATTCACCGACGCCCAGATAAACAGCATCGTCAGAAGGGTGCCCGACGTGCTCACGTGCAACCCCCACAAGAGGCTCTTGCCAAAGTTCCAATTCTTGCTCTCAAAAGGTGCCTCGAACTCTGACATCGTTCATCTTGTGGACAGGTGCCCCAGACTCATCGGCTCGAGCCTCGAGAACAACGTGATCCCTACCTTCGAATTGGTGAGAAGGTTCCTTCAATCTGATAAGAAAACTATTGATTGCGTACTCGCTAGTCGACATTTCCTTGATTACAACGTTGCCGCGCAGAATGTGAACATGTTGCTTGGTGTTGGAGTCAAGGACTCCAACATCGCCTATTTGTTCCGTACGAGGCCTTCTATACTGTTGTCTAGTGACCTGATGAGGACCGTCTATGAGGTTAAGGAAATGGGGTTTGATCCTTCAAAGATAAGTTTCGTGATGGCGATGCACGCCAAAAGGGGCATTTCGAAGTCGCGGTGGGACGCAAAAGTTGATGCCTTTAAGAGCTGGGGTTGGTCTGAAGATATGGTTCTTGACACGTTCAGGAAGCATCCCCTCTTTATGTTAATGTCCAGAGATAAAATTAACGAGGTGATGAGATTTTGGGTTAATCGGTTAGGTTGGGACCCTTTGGCCATTGCCAGAAGCCCGAAGATGTTTGCGTATAGTTTGGAGAAAAGGATCATTCCCAGGGGTTTGGTTGTCCGGTATTTGATTGCGAAGGGTTTGAGAGAGAAGAGTGCCAGCTTGTTTACCCCATTTTCTGTTTCTGAAAAGTTGTTTCTCGAAAATTATGTGATGCGTTTTAAGGAGGAAATGTGTCAACTATTAAAGCTGTACCAGGAAAAAATGAGTTTCCAAGAAAACAGGGAGGATGGTGTAGCAGCTGGCGGTTAG 1170 0.4786 MFRFQPFKPLLLYLKSHTRTPLQTPKPNPLPSALSLKHISLASEQHSFTVSYLVNNCGFSPETALKASERVRFETPQKPDSVIAFFRDNGFTDAQINSIVRRVPDVLTCNPHKRLLPKFQFLLSKGASNSDIVHLVDRCPRLIGSSLENNVIPTFELVRRFLQSDKKTIDCVLASRHFLDYNVAAQNVNMLLGVGVKDSNIAYLFRTRPSILLSSDLMRTVYEVKEMGFDPSKISFVMAMHAKRGISKSRWDAKVDAFKSWGWSEDMVLDTFRKHPLFMLMSRDKINEVMRFWVNRLGWDPLAIARSPKMFAYSLEKRIIPRGLVVRYLIAKGLREKSASLFTPFSVSEKLFLENYVMRFKEEMCQLLKLYQEKMSFQENREDGVAAGG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1359 389 PANTHER CGI-12 PROTEIN-RELATED 5 377 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 Gene3D Transcription termination factor 3, mitochondrial 185 370 IPR038538 -
Ssu1g1359 389 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 5 377 - -
Ssu1g1359 389 Pfam mTERF 185 352 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 Pfam mTERF 84 234 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Ssu1g1359 389 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1359 Ssu-Chr1 29711126 29712295 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1359 mTERF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1359 K15032 - gmx:100792944 483.796