Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1358 ATGTTGAATACACTTCTCTACCTGAAAGGTGTCGCTTTCACAGCAACATCACGTTACCCTTTGATCCACCACTCCCCATTACTATTTTCTCTGCGTTTCTGCACAACCACTTCAAATTCACGCTCATTTGCGGTATCCTACCTCATCCACAATTTTGGGTTCTCCCCTGAATCTGCTTCCAAAACTTCTGACTCCTACCACATTTGTTTCCGGACCCCGGAAAAGCCTGACTCAGTGATCAGGTTCTTTAGAGACCGCGGTTTCTCTAACTCTCAAATAAACAATGTGATTAGAAAGGCACCGTGGCTACTTTCATGCGACCCCTGCAAAAGGGTATTGCCCAAGTTTGAATTTTTACTCTCAAAAGGTGTTTCTAGCTCTGAAATTGTTGACCAAGTGAGTAAGTACCCTAGAATACTGACTCCAAGCCTCAAGAATCATATAGTCCCAACCTATGAATTGGTATATAGATTCTTGCAATCTGATAAGAACACTGTTGCTTGTATGTTTGGTAATTCGTTTTTTTCTGGTGGCCGTCATTTGGCACGTAACATCAGAGTGATGCTTGAGAATGGAGTGACAGATTCAAACATTGCAAGATTGCTTCGGAACCGTTGTAAGGCGTTGTTCGGCTCAACTGATATGCTTAAGGCGGTGGAGGAAGTCAAGGATTTGGGGTTTGATCCTTCAAAAGCAATTTTTGCTATAGCATTGCTTGCCATAAAATGTATGAGTCAAACCCGGTGGAAGGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGCCTTTCTTGAAGCATTTATGAGGCACCCTCACTGTGTGTTGGCATCCACTGACAAAATAAACATAGTGATGAGCTTTTGGGTCAATCAGATGAGCTGGGATGCTTTGTCTCTTGTTGAAGGTCCAAAGATTTTGGGTTGA 933 0.4266 MLNTLLYLKGVAFTATSRYPLIHHSPLLFSLRFCTTTSNSRSFAVSYLIHNFGFSPESASKTSDSYHICFRTPEKPDSVIRFFRDRGFSNSQINNVIRKAPWLLSCDPCKRVLPKFEFLLSKGVSSSEIVDQVSKYPRILTPSLKNHIVPTYELVYRFLQSDKNTVACMFGNSFFSGGRHLARNIRVMLENGVTDSNIARLLRNRCKALFGSTDMLKAVEEVKDLGFDPSKAIFAIALLAIKCMSQTRWKEKVDTFKKWGWSDEAFLEAFMRHPHCVLASTDKINIVMSFWVNQMSWDALSLVEGPKILG 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1358 310 Pfam mTERF 244 310 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 Pfam mTERF 81 228 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 16 310 - -
Ssu1g1358 310 Gene3D Transcription termination factor 3, mitochondrial 52 173 IPR038538 -
Ssu1g1358 310 Gene3D Transcription termination factor 3, mitochondrial 174 310 IPR038538 -
Ssu1g1358 310 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 SMART mt_12 236 262 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 SMART mt_12 199 228 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Ssu1g1358 310 PANTHER CGI-12 PROTEIN-RELATED 16 310 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1358 Ssu-Chr1 29702645 29703577 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1358 mTERF 2.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1358 K15032 - gmx:102663414 463.381