LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g1356	ATGTTTCCTCCCAGCGCTTCAACCCCTTCTTCTCCTCTACCTGAAGTCACTCACAAGAACACCCCTTCAAACCCCGAACCAAATCATTTCCCATCAATACTCTCTCTGAAATACAGCTCAGCCACTTCAGAACAACGCTCATTCGCGGTTTCCTACCTCGTTAACAATTGCGGGTTCTCACCAGAAACCGCTCTCAAGGCCTCCAAGTTCACTCAATTCGAGACCGCCAAAAAGCCCGACTCAGTTATCGCCTTCTTCAGAAACAACGGATTCACCAGCTCCCAGATAAACAGCATCGTTAGAAGGGCACCCAACGTGCTCACATGCGACCCCCACAAAAGGGTTTTTCCGAAGTTCGAATTTTTTCTCTCCAAAGGGGCCTCAAGCTCTGACGTTGTGGAACTGGTGAGTCGGAGCCCCAGAATCCTGTACTCGAGCCTCGAGAACAACATAATCCCTTCCTATGAGCTGGTGCGAAGGTTCCTTCAATCTGATAAGAAAACGATGGATTGTATAATATCTTGTGGGCATTTCTTTGATACCGATCGTGTGGTGCGAAATGTGAGGCTCTTGACTGATGATGGAGTAACGGACTCAAACATCTCCTATTTGTTGCGCAGAAGACTTTCTATAATCCTGTGTTCTGGCATGAAGGGGGCCTTGGATGAGGTTAAGGAAATGGGATTTGACCCTTCCAAGTTGAAGTTTGTGATAGCGCTGCTCGCGAAAAGGATCATTCCGAAATCCCGGTGGGAGGCAAAAGTTGATGCTTTTAAGAGCTGGGGTTGGTCTGAAGAATTGTTTCTTCGTGTGTTCAAGAAGCAGCCGCTCTTTATGTTAGTGTCCCAAGAAAAGATTAATAGGATTATGAGATTTTGGGTTAATCGGTTAGGTTGGGACCCTTTGGCCCTTACCGGAAGGCCGGAGATGTTTGGATTTAGTTTGGAGAAGAGGATCATTCCAAGGGCTCTTGTTGTCCAGTATTTACTCGCAAAAGGTTTGAGGAAAAAGAGTGCCAGCTTGCTTACCCCCATTTGCTGTTTCTGA	1047	0.469	MFPPSASTPSSPLPEVTHKNTPSNPEPNHFPSILSLKYSSATSEQRSFAVSYLVNNCGFSPETALKASKFTQFETAKKPDSVIAFFRNNGFTSSQINSIVRRAPNVLTCDPHKRVFPKFEFFLSKGASSSDVVELVSRSPRILYSSLENNIIPSYELVRRFLQSDKKTMDCIISCGHFFDTDRVVRNVRLLTDDGVTDSNISYLLRRRLSIILCSGMKGALDEVKEMGFDPSKLKFVIALLAKRIIPKSRWEAKVDAFKSWGWSEELFLRVFKKQPLFMLVSQEKINRIMRFWVNRLGWDPLALTGRPEMFGFSLEKRIIPRALVVQYLLAKGLRKKSASLLTPICCF	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g1356	348	SMART	mt_12	301	335	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	SMART	mt_12	97	128	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	SMART	mt_12	269	300	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	SMART	mt_12	133	164	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	Pfam	mTERF	252	339	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	Pfam	mTERF	84	293	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	PANTHER	TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	28	345	-	-
	Ssu1g1356	348	PANTHER	CGI-12 PROTEIN-RELATED	28	345	IPR003690	GO:0003690\|GO:0006355
	Ssu1g1356	348	MobiDBLite	consensus disorder prediction	1	28	-	-
	Ssu1g1356	348	MobiDBLite	consensus disorder prediction	11	28	-	-
	Ssu1g1356	348	Gene3D	Transcription termination factor 3, mitochondrial	177	347	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g1356	Ssu-Chr1	29695546	29696592	Dispersed/Proximal

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Ssu1g1356		mTERF	1.4e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g1356	K15032		-	gmx:102666739	463.766