Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1355 ATGGACGACAACATTGGAGGCAGTTCCTCTCGCGACAACAACGGTGGCATCAAGGAACAGGACCGGTTGCTGCCAATAGCCAACGTTGGTCGGCTCATGAAGCGGATTTTGCCTCCGAACGCGAAAATCTCGAAGGAAGCGAAGGAAACAATGCAGGAATGTGTGTCGGAGTTCATAAGCTTTGTGACCAGCGAAGCTTCGGAGAAGTGCAGGAAGGAAAGGAGAAAGACCGTGAATGGTGATGACATATGCTGGGCCTTGGCAACGCTAGGCTTTGATGACTATGCGGAACCAATGAGAAGGTACTTGCATAGATATAGAGAAATAGAGGTAGACCATAAGGTCATTAATCATCAAGAAAGAGGGAATAGCCTTTAA 378 0.4788 MDDNIGGSSSRDNNGGIKEQDRLLPIANVGRLMKRILPPNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYREIEVDHKVINHQERGNSL 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1355 125 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu1g1355 125 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g1355 125 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu1g1355 125 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 118 - -
Ssu1g1355 125 Gene3D Histone, subunit A 13 124 IPR009072 GO:0046982
Ssu1g1355 125 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Ssu1g1355 125 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Ssu1g1355 125 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Ssu1g1355 125 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Ssu1g1355 125 SUPERFAMILY Histone-fold 20 114 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1355 Ssu-Chr1 29691477 29691854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1355 17 122 CCAAT-HAP3 Transcription Factor Family AT2G47810 74.528 1.74e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu1g1355 CBFD_NFYB_HMF 7.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1355 K08065 - gmx:100794513 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1355 1 29691477 29691854 Ssu1g1355 1 29691477 29691854 ECH
Ssu6g0305 6 4876731 4877120 Ssu1g1355 1 29691477 29691854 PCT