Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1354 ATGTACCCACAAATACCTAACTTGTATCAGGTACAGGTACGTACTTGCACTCTCTCTGAAACACATCTCACTCGCTTCCGAACAACACTCATTCACGGTTTCCTACCTCGTAAACAACTGCGGCTTCTCCTCGGAAACCGCTCTCAAGGCTTCCGAGCGCGTCCGTTTCGAGACCCCTCAAAAGCCCGACTCAGTAATCGCTTTCTTCAGAGACAACGGATTCACCGACGCCCAGATAAACAGCATCGTCAGAAGGGTGCCCGACGTGCTCACGTGCAACCCCACAAGAGGCTCTTGCCAAAGTTCCAATTCTTGCTCTCAAAAGGTGCCTCGAACTCTGACATCGTTCATCTTGTGGACAGGTGCCCCAGACTCATCGGCTCGAGCCTCGAGAACAACGTGATCCCTACCTTCGAATTGGTGAGAAGGTTCCTTCAATATGATAAGAAAACTATTGATTGCGTACTCGCTAGTCGACATTTCCTTGATTACAACGTTGCCGCGCAGAATGTGAACATGTTGCTTGGTGTTGGAGTCAAGGACTCCAACATCGCCTATCTGTTCCGTACGAGGCCTTCTATACTGTTGTCTAGTGACCTGATGAGGACCGTCTATGAGGTTAAGGAAATGGGGTTTGATCCTTCAAAGATAAGTTTCGTGATGGCGATGCACGCCAAAAGGGGCATTTCGAAGTCGCGGTGGGACGCAAAAGTTGATGCCTTTAAGAGCTGGGGTTGGTCTGAAGATATGGTTCTTGACACGTTCAGGAAGCATCCCCTCTTTATGTTAATGTCCAGAGATAAAATTAACGAGGTGATGAGATTTTGGGTTAATCGGTTAGGTTGGGACCCTTTGGCCATTGCCAGAAGCCCGAAGATGTTTGCGTATAGTTTGGAGAAAAGGATCATTCCCAGGGGTTTGGTTGTCCGGTATTTGATCGCGAAGGGTTTGAGAGAGAAGAGTGCCAGCTTGTTTACCCCATTTTCTGTTTCTGAAAAGTTGTTTCTCGAAAATTATGTGATGCGTTTTAAGGAGGAAATGTGTCAACTATTAAAGCTGTACCAGGAAAAAATGAGTTTCCAAGAAAACAGGGAGGATGGTGTAGCAGCTGGCGGTTAG 1119 0.4736 MYPQIPNLYQVQVRTCTLSETHLTRFRTTLIHGFLPRKQLRLLLGNRSQGFRARPFRDPSKARLSNRFLQRQRIHRRPDKQHRQKGARRAHVQPHKRLLPKFQFLLSKGASNSDIVHLVDRCPRLIGSSLENNVIPTFELVRRFLQYDKKTIDCVLASRHFLDYNVAAQNVNMLLGVGVKDSNIAYLFRTRPSILLSSDLMRTVYEVKEMGFDPSKISFVMAMHAKRGISKSRWDAKVDAFKSWGWSEDMVLDTFRKHPLFMLMSRDKINEVMRFWVNRLGWDPLAIARSPKMFAYSLEKRIIPRGLVVRYLIAKGLREKSASLFTPFSVSEKLFLENYVMRFKEEMCQLLKLYQEKMSFQENREDGVAAGG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1354 372 SMART mt_12 284 318 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 SMART mt_12 185 213 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 SMART mt_12 116 148 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 PANTHER CGI-12 PROTEIN-RELATED 92 360 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 Gene3D Transcription termination factor 3, mitochondrial 158 353 IPR038538 -
Ssu1g1354 372 Pfam mTERF 94 217 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 Pfam mTERF 168 335 IPR003690 GO:0003690|GO:0006355
Ssu1g1354 372 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 92 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1354 Ssu-Chr1 29657888 29663814 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1354 mTERF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1354 K15032 - gmx:102666739 341.658