Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1353 ATGAGTCAAACCCGGTGGAAGGAGAAAGTTGATACCTTTAAGAAATGGGGTTGGTCTGATGAAGCCTTTCTTGAAGCATTTATGAGGCACCCTCACTGTGTGTTGGCATCCACTGACAAAATAAACATAGTGATGAGCTTTTGGGTCAATCAGATGAGCTGGGATGCTTTGGCTCTTGTTGAAGGTCCAAAGATTTTTGGGTTGAGTATGGAGAAAAGGATCATTCCAAGGGCTCTTGTTGTCCAGTATTTACTCGCAAAAGGCTTGAGGAAAAGGAGTGCCAGCTTTCTTACCCCATTTTCTGTTTCTGAAAAGGTGTTTCTTGAAAAGTATGTGATGTGTTTTAAGGAGGACACATGTCAAATTTTAATGCTGTACAAGGAAAAAATGAGTGTTCAGGGAAAAAAGGAGGATGGTACAGCATCTGGCAGTTATCAAATGGTTAACTCATGA 453 0.4106 MSQTRWKEKVDTFKKWGWSDEAFLEAFMRHPHCVLASTDKINIVMSFWVNQMSWDALALVEGPKIFGLSMEKRIIPRALVVQYLLAKGLRKRSASFLTPFSVSEKVFLEKYVMCFKEDTCQILMLYKEKMSVQGKKEDGTASGSYQMVNS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1353 150 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 135 - -
Ssu1g1353 150 Gene3D Transcription termination factor 3, mitochondrial 1 119 IPR038538 -
Ssu1g1353 150 Pfam mTERF 2 107 IPR003690 GO:0003690|GO:0006355
Ssu1g1353 150 PANTHER CGI-12 PROTEIN-RELATED 1 135 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1353 Ssu-Chr1 29654871 29655323 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1353 mTERF 1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1353 K15032 - gmx:102663414 232.261