Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1352 ATGTTTCCTTCCCAGCGCTTCAAACCCCTTCTTCTCCTCTACCTGAAGTCACTCACAAGAACACCCCTTCAAACCCCGAAACCAAATCATTTCCCATCAATACTCTCTCTGAAATACAGCTCAGCCACTTCAGAACAACGCTCATTCGCGGTTTCCTACCTCGTTAACAATTGCGGGTTCTCACCAGAAACCGCTCTCAAGGCCTCCAAGTTCACTCAATTCGAGACCGCCAAAAAGCCCGACTCAGTTATCGCCTTCTTCAGAAACAACGGATTCACCAGCTCCCAGATAAACAGCATCGTTAGAAGGGCACCCAACGTGCTCACATGCGACCCCCACAAAAGGGTTTTTCCGAAGTTCGAATTTTTTCTCTCCAAAGGGGCCTCAAGCTCTGACGTTGTGGAACTGGTGAGTCGGAGCCCCAGAATCCTGTACTCGAGCCTCGAGAACAACATAATCCCTTCCTATGAGCTGGTGCGAAGGTTCCTTCAATCTGATAAGAAAACGATGGATTGTATAATATCTTGTGGGCATTTCTTTGGTACCGATCGTGTGGTGCGAAATGTGAGGCTCTTGACTGATGATGGAGTAACGGACTCAAACATCTCCTATTTGTTGCGCAGAAGACTTTCTATAATCCTGTGTTCTGGCATGAAGGGGGCCTTGGATGAGGTTAAGGAAATGGGATTTGACCCTTCCAAGTTGAAGTTTGTGATAGCGCTGCTCGCGAAAAGGATCATTCCGAAATCCCGGTGGGAGGCAAAAGTTGATGCTTTTAAGAGCTGGGGTTGGTCTGAAGAATTGTTTCTTCGTGTGTTCAAGAAGCAGCCCCTCTTTATGTTAGTGTCCCAAGATAAGATTAATAGGATTATGAGATTTTGGGTTAATCGGTTAGGTTGGGACCCTTTGGCCCTTACTGGAAGGCCGGAGATGTTTGGATTTAGTTTGGAGAAGAGGATCATTCCAAGGGCTCTTGTTGTCCAGTATTTACTCACGAAAGAATTGCAGGCTCGGGTTGAGTCTTGGAGCAATGGCAAGGTTCTGCATCATGACTTGGTGTTCAAATGTTCAAGCTGTAGAAACTGCCCCTTTGCTGGTAGGGATAGGGTTCATACATTTGACTCTCCAAACACCCACAATGTGATCAGGTTCTTTAGAGACCGCGGTTTCTCTAACTCTCAAATAAACAATGTGATTAGAAAAGCACCGTGGCTACTTTCATGCGACCCCTGCAAAAGGGTATTGCCCAAGTTTGAATTTTTACTCTCAAAAGGTGTTTCTAGCTCTGAAATTGTTGACCAAGTGAGTAAGTACCCTAGAATACTGACTCCAAGCCTCAAGAATCATATAGTCCCAACCTATGAATTGGTATATAGATTCTTGCAATCTGATAAGAACACTGTTGCTTGTATGTTTGGTAATTCGTTTTTTTCTGGTGGCCGTCATTTGGCACGTAACATCAGAGTGATGCTTGAGAATGGAGTGACAGATTCAAACATTGCAAGATTGCTTCGGAACCGTTGTAAGGCGTTGTTCGGCTCAACTGATATGCTTAAGGCAGTGGAGGAAGTCAAGGATTTGGGGTTTGATCCTTCAAAGCAATTTTTGCTATAG 1614 0.4504 MFPSQRFKPLLLLYLKSLTRTPLQTPKPNHFPSILSLKYSSATSEQRSFAVSYLVNNCGFSPETALKASKFTQFETAKKPDSVIAFFRNNGFTSSQINSIVRRAPNVLTCDPHKRVFPKFEFFLSKGASSSDVVELVSRSPRILYSSLENNIIPSYELVRRFLQSDKKTMDCIISCGHFFGTDRVVRNVRLLTDDGVTDSNISYLLRRRLSIILCSGMKGALDEVKEMGFDPSKLKFVIALLAKRIIPKSRWEAKVDAFKSWGWSEELFLRVFKKQPLFMLVSQDKINRIMRFWVNRLGWDPLALTGRPEMFGFSLEKRIIPRALVVQYLLTKELQARVESWSNGKVLHHDLVFKCSSCRNCPFAGRDRVHTFDSPNTHNVIRFFRDRGFSNSQINNVIRKAPWLLSCDPCKRVLPKFEFLLSKGVSSSEIVDQVSKYPRILTPSLKNHIVPTYELVYRFLQSDKNTVACMFGNSFFSGGRHLARNIRVMLENGVTDSNIARLLRNRCKALFGSTDMLKAVEEVKDLGFDPSKQFLL 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1352 537 SMART mt_12 432 463 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 SMART mt_12 501 530 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 SMART mt_12 396 427 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 Pfam mTERF 85 294 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 Pfam mTERF 253 349 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 Pfam mTERF 383 530 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 Gene3D Transcription termination factor 3, mitochondrial 182 348 IPR038538 -
Ssu1g1352 537 Gene3D Transcription termination factor 3, mitochondrial 349 534 IPR038538 -
Ssu1g1352 537 PANTHER CGI-12 PROTEIN-RELATED 370 534 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 PANTHER CGI-12 PROTEIN-RELATED 13 339 IPR003690 GO:0003690|GO:0006355
Ssu1g1352 537 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 370 534 - -
Ssu1g1352 537 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 13 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1352 Ssu-Chr1 29647062 29654850 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1352 mTERF 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1352 K15032 - gmx:102666739 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0306 6 4900542 4901165 Ssu1g1352 1 29647062 29654850 PCT