Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1351 ATGTTTATTTCCCAGCTCTTCAAACACCTCTATCTGAAGGGAACCATAAGAACAACACTTCCATTTCCAACCCCAAAAGCGAATCCTTTTCCATCAACATTCTCTTCCAAATACAGCTCCACCACTTCTCAGAAACACTCATTCACGGTTTCCTACCTCGTAAACAATCGTGGGTTCTCACCAGAAACTGCTCTAAAGACTTCCAAGCTAGTTCGATTCAACACCGCCCAAAAGCCCAACACAGTCATCGCCTTCTTCAGAAGCCATGGTTTCTCTGACTCCCAGATAAACAGCATTGTTAGAAGGGCACCAAACGTGCTCACATGCGACCCCAACAGAAGGGTTTTGCcaaagtttgagtttttatgCTCCAAAGGCGCTTCAAGCTCTGAGATTGTGGAGGTGGTGAATCGGTGCCCCAGAATCCTGTACTCGAGCCTCGAGAATAGCATAATCCCTACCTTTGAATTGGACTCCAACATCACCTATGTGTTGCGTAGGAGCCCTTCAGTAATCGTGTCTCGTGGCATGAGGAAGGTCGTGGATGAACTTAAGGAAATGGGGTTTGAAACCTCCAAGATCAATTTTGTGATTGCATTGCAGGCCAAAAGGGCTGTTTCCAAATCGCGGTGGGACGCGAAAGTTGTTGCCTTTAAGAGCTGGGGTTGGTCTGAAGAATTGGTTCTTCATGTGTTTAGGAGGTGCCCCCTCTTCATGTTGTCGTCCGAggataaaattaataaggtgATGAGATTTTGGGTTGATCGGTTGGGTTGGGACTCTTTGGCCCTTGCCAGAAAGCCAGTGATTTTTGGATTTAGTTTGGAGAAGAGGATCATTCCAAGGGCTCTTGTTGTCCAGTATTTACTCACGAAAGGATTGAGGAAAAAGAGTGCTAGCTTGCTTACCCCATTTTTTATTTCGGAAAAGGCGTTTCTTGAAAAGTATGTGAAATATTTtaaggaggaagaagaggaacTGTTAAAACTGTACCAGGAAAAAATGAGTGATCCATGTTAG 1020 0.4275 MFISQLFKHLYLKGTIRTTLPFPTPKANPFPSTFSSKYSSTTSQKHSFTVSYLVNNRGFSPETALKTSKLVRFNTAQKPNTVIAFFRSHGFSDSQINSIVRRAPNVLTCDPNRRVLPKFEFLCSKGASSSEIVEVVNRCPRILYSSLENSIIPTFELDSNITYVLRRSPSVIVSRGMRKVVDELKEMGFETSKINFVIALQAKRAVSKSRWDAKVVAFKSWGWSEELVLHVFRRCPLFMLSSEDKINKVMRFWVDRLGWDSLALARKPVIFGFSLEKRIIPRALVVQYLLTKGLRKKSASLLTPFFISEKAFLEKYVKYFKEEEEELLKLYQEKMSDPC 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1351 339 Pfam mTERF 84 198 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 Pfam mTERF 207 312 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 22 157 - -
Ssu1g1351 339 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 158 336 - -
Ssu1g1351 339 PANTHER CGI-12 PROTEIN-RELATED 22 157 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 PANTHER CGI-12 PROTEIN-RELATED 158 336 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 SMART mt_12 133 190 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 SMART mt_12 229 260 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 SMART mt_12 261 295 IPR003690 GO:0003690|GO:0006355
Ssu1g1351 339 Gene3D Transcription termination factor 3, mitochondrial 54 330 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1351 Ssu-Chr1 29633906 29635045 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1351 mTERF 1.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1351 K15032 - gmx:100792944 388.267