Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1350 ATGTCTCGTTGCCAACGCTTCAAGTTCCTTCTCCTCTATCTGAAGGGACTCAGAGGAACACCGCTTCAAACCCCGACACCCAATCCTTTTCCCTCAACATTCTCTCTGAAATACAGCTCGCTCACTTCAGAGCAACACTCGTTCACGGTTTCATACCTCATAAACAACTGCGGCTTCTCATCGGAAACTGCTCTCAAGGCTTCCAAGCGCGTTCGATTCGAGACCCCGCAAAAGCCCGACTCGGTCATCGCTGTCTTCAGAAGCAACGGATTCACCAACACCCAGATAAGCCGCATTGTCAGAACGGCACCCAACGTGCTCACATGCGACCCCCACAAGAGGGTTCTGCCAAAGTTTGAATATTTACGCTCCAAAGGTGCGTCGAGCTTTGACATAGTGCAGCTGGTGTGTAGGAGCCCCAGAATCCTGTACTGCAGCCTCGAGAATAGCGTGATCCCTGCCTTTGAATCGGTGAGGAGGATCCTTCAATCTGATAAGGAAACTATTCGTCGTTTACTTTCTTGTTGCCATTTCTTTGGTCACGATCTTGCTGTGCAGAATGTGAGATTGTTGCTTGATAACGGAGTCTCGGACTCAaacatcaattttttgttacgCAGAAGGCCTTCTGTTATCTTGTCTTATGACATGAGGGAGGCCATTGATGAAGTTAAGGGAATGGGATTTGAGACCTCCAAGTGTAAGTTTGTGATCGCGTTGCTGGCGAAACGGGCCGTTTCGAAATCCGGGTGGGATGCGAAAGTTGAGGCCTTAAAGAGCTGGGGTTGGTCTGAGGAAATGGTTCTTGATACGTTCAGGAGGCAGCCCCTGCTTATGTTAGTGTCCAAAGATAAGATTAATAGGGTGATGGGATTTTGGGTTAATCAGTTAGGTCGGGACTCTTTGGCCCTTGCCAGAAGGCCAGAGATGTTTGCGTTTAGTTTGGAGAAAAGGATCATTCCAAGGGCTTTCGTTGTGCAGTATTTGATTGCAAAGGGTTTGCTAAAAAAGAGTGGCAACTTGTTTTCCCCATTTGTTCTTTCAGAAAAGTTGTTTCGCGAAAGGTATGTGAACCGTTTTAAGGAGGAAAGGTGTCAACTATTGAAGCTATACCAGGAAAAAATGAATGTTCAATAA 1137 0.4635 MSRCQRFKFLLLYLKGLRGTPLQTPTPNPFPSTFSLKYSSLTSEQHSFTVSYLINNCGFSSETALKASKRVRFETPQKPDSVIAVFRSNGFTNTQISRIVRTAPNVLTCDPHKRVLPKFEYLRSKGASSFDIVQLVCRSPRILYCSLENSVIPAFESVRRILQSDKETIRRLLSCCHFFGHDLAVQNVRLLLDNGVSDSNINFLLRRRPSVILSYDMREAIDEVKGMGFETSKCKFVIALLAKRAVSKSGWDAKVEALKSWGWSEEMVLDTFRRQPLLMLVSKDKINRVMGFWVNQLGRDSLALARRPEMFAFSLEKRIIPRAFVVQYLIAKGLLKKSGNLFSPFVLSEKLFRERYVNRFKEERCQLLKLYQEKMNVQ 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1350 378 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 14 376 - -
Ssu1g1350 378 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Ssu1g1350 378 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Ssu1g1350 378 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Ssu1g1350 378 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Ssu1g1350 378 Gene3D Transcription termination factor 3, mitochondrial 178 369 IPR038538 -
Ssu1g1350 378 Pfam mTERF 84 241 IPR003690 GO:0003690|GO:0006355
Ssu1g1350 378 Pfam mTERF 251 352 IPR003690 GO:0003690|GO:0006355
Ssu1g1350 378 PANTHER CGI-12 PROTEIN-RELATED 14 376 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1350 Ssu-Chr1 29609497 29610633 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu1g1350 mTERF 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1350 K15032 - gmx:102666739 447.588