Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1339 ATGTTTAGCCCTGAAGGTGaacttaaaataagttttgGCTATCAATGCAATAGTGATAGAGGTATACCTTGCAATGAAATCCACAGAACAAGCAGTTTCTCTTGCTTGTCCGGTGCTGCCTTAAGTGCAAATGCTACACTCGCCAACACAAACATCTGCAATGGTGTAATAGGAGAGGAAATCCTTCCAAGTTTGGACTCTCCTAAATCATTTCGTAGCGTACCCTCTTCGCCAAGTCTTCCAAAGTTGGACATGTTCTCATCTTCTGTCCATAGTAGTTTGTCAAACCTAAGTTGCAGCCCATCCACTCCAAGTAATATGCCTGAATATGACCCTTGTACATTAAAATCCATGAGTGCTCCTTCCAGAAGTGAAGGTTTTCTTAATGCCATGGAAGTCCAAGTTGCTGGAGGAGCTGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGCTGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCTGACTTTCTGGCTGGTACCCTTTATGACTCTGTatcttatttgaatatgttatacTGGGATTTGGATCCAGATTCCATAAAAGCTTCTACCGATGTGGGTATGGGTGGATCCTTTCAATATAATTTGGATGACAGTCTTATTCCTCAGGAGCATCAATCTCCGTCAACATTTAAGGGAAACAATTCTAATCTTGACTGTTTTGCAAACAGTACTCCACCTTCCAAGTCAGCAGTGTCTCCTAAATCATCTTCACATACAGTACTTGATGGCCTCCAGCATGTTCTTAGTCAGGCTGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCAGATTTAGTTTCTGTTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGGAATGACTTATATACACTTAATCTTGGTGACAGCAGAGCAGTATTGGCAACATGCAGTACAGATAATAGAATGAATGGGAATGAGAGATTGAAGGCTATCCAGCTCACAGATAGTCATACTGTTGACAATGAAGCTGAAAGAGCTCGACTTCTTGCTGATCATCCTGATGATCCTAAAACCATAGTAGCAGGGAAAGTGAAGGGAAAACTGAAGGTTACACGAGCTTTAGGAGTGGGCTACTTGAAAAAGAAAAATCTTAATGATGCATTGATAGGAATCCTTCGAGTTCGTGATCTTACAAGCCCGCCATATATTTCAACCGATCCATCACTAAATGTGCACAAAATCTCAGATTCTGATCAATTTGTTATAGTTGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAAGCAGTAAAGCTTGTAGAGTCTTATATCTTGAGCAACCCTTTTGGTGATCCAGCAAAATTTCTTATTGAGCAACTAGTTGCAAGAGCAGCTGATTCTGCAGGTCAATTTTCAAGATCTCatgctaaatttaattttatttgcatgAATATGAATTTATGTTGTGTTATAATTGGTTACATAAGTGATTCTCTTGCAGGTTTCAGCATGGAAGAGTTGATGAATGTTCCTGATGGGAGGAGGAGGAAGTACCATGATGACGTGACCATAATTGTGATCATCCTTGGTATGAATCAACGGACTTCAAAAGCATCAACTTGCATCTAG 1638 0.3938 MFSPEGELKISFGYQCNSDRGIPCNEIHRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRSVPSSPSLPKLDMFSSSVHSSLSNLSCSPSTPSNMPEYDPCTLKSMSAPSRSEGFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDSVSYLNMLYWDLDPDSIKASTDVGMGGSFQYNLDDSLIPQEHQSPSTFKGNNSNLDCFANSTPPSKSAVSPKSSSHTVLDGLQHVLSQAENDFLYMVEQEMEERPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATCSTDNRMNGNERLKAIQLTDSHTVDNEAERARLLADHPDDPKTIVAGKVKGKLKVTRALGVGYLKKKNLNDALIGILRVRDLTSPPYISTDPSLNVHKISDSDQFVIVGSDGLFDFFSNDEAVKLVESYILSNPFGDPAKFLIEQLVARAADSAGQFSRSHAKFNFICMNMNLCCVIIGYISDSLAGFSMEELMNVPDGRRRKYHDDVTIIVIILGMNQRTSKASTCI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1339 545 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 2 478 - -
Ssu1g1339 545 PANTHER PROTEIN PHOSPHATASE 2C 40-RELATED 502 544 - -
Ssu1g1339 545 CDD PP2Cc 140 468 IPR001932 -
Ssu1g1339 545 PANTHER PROTEIN PHOSPHATASE 2C 2 478 IPR015655 GO:0004722|GO:0006470
Ssu1g1339 545 SMART PP2C_4 118 530 IPR001932 -
Ssu1g1339 545 ProSiteProfiles PPM-type phosphatase domain profile. 127 532 IPR001932 -
Ssu1g1339 545 SUPERFAMILY PP2C-like 140 533 IPR036457 -
Ssu1g1339 545 PANTHER PROTEIN PHOSPHATASE 2C 502 544 IPR015655 GO:0004722|GO:0006470
Ssu1g1339 545 Pfam Protein phosphatase 2C 265 465 IPR001932 -
Ssu1g1339 545 Gene3D - 113 541 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1339 Ssu-Chr1 29416362 29418249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1339 4 545 PP2C-type Phosphatase Gene Family AT3G16560 59.425 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1339 - - gmx:100791404 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1339 1 29416362 29418249 Ssu1g1339 1 29416362 29418249 ECH
Ssu6g0317 6 5074195 5076068 Ssu1g1339 1 29416362 29418249 PCT