Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1338 ATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATTCCTAGGAAGTGCTCTGCGACAAACAGATTGATAACAGCGAAGGACCATGCTTCTGTTCAGGTTAACGTTGGGCATTTGGATGAGAATGGTGTCTACAATGGCCATTTCTCCACTTTTGCCCTCTGTGGCTTCATCCGTGCTCAGGTCTCCATTTATTATGTCACTGTTTTTCTATTCTGTGTTTGGAATttcttgtttattattattgtttga 252 0.4008 MQNEEGQITELYIPRKCSATNRLITAKDHASVQVNVGHLDENGVYNGHFSTFALCGFIRAQVSIYYVTVFLFCVWNFLFIIIV 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1338 83 PANTHER 40S RIBOSOMAL PROTEIN S21 1 63 - -
Ssu1g1338 83 Gene3D - 1 65 IPR038579 -
Ssu1g1338 83 Pfam Ribosomal protein S21e 1 61 IPR001931 GO:0003735|GO:0005840|GO:0006412
Ssu1g1338 83 PANTHER 40S RIBOSOMAL PROTEIN S21 1 63 IPR001931 GO:0003735|GO:0005840|GO:0006412
Ssu1g1338 83 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1338 Ssu-Chr1 29375297 29375669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1338 1 61 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.607 1.76e-37 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1338 K02971 - gmx:100499937 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0320 6 5090878 5091924 Ssu1g1338 1 29375297 29375669 PCT