Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1333 ATGGAGGATTTGGGGGCGCAGAAGAGGAAGCAGCGAGAGTTTGCGTTAGCGTCGGTTTCCGAAGCGTCTTTCACTCCTTCTCGTGCTTCTCCGGGGGTTGCTCTCTTCGCCGGTGACCGTCTTCAAATTCAGAATGAATCTCACCATATCGCTCTCAATGCTCATCTTCCAGCCGTTCAGCTGTTCAGATTAGGTCCTATTGAGTCGGTTTGCATGGTGGAAGGGGCTGATGCTGGCAAACAGACATCGTATTCCAGTGGAGTCGCTATACAGTTTAGAAATGAGGAAGAGAGTGAGGCCTTCCATTGTGTATTCCAACAATGGAAGAAGGAATTCGATGTTCAAGTAGGGAACTTACCAAATGGAACTATTGAAATAACTTCTAAAAGCAAATTTGATGAAAAGATAGAGCCATCTTCtgcaaaaatgtattttcattattatggaCAACTTCTGCATCAGCAAAATATGTTGCAGGACTATGTGAGGACAGGAACCTATTATGCTGCAGTTATTGAGAATCGTGCAGATTTCATAGGTCGTGTAGTAGTTGATGTTGGTGCTGGCAGTggtattttgtcattatttgcTGCCCAGGCTGGTGCAAAACATGTTTATGCTGTGGAAGCATCTGAAATGGCGGAATATGCACGAAAACTTATAGCTGGGAACCCAATACTGGGTCAACGAATTACagttatTAAAGGCAAAGTTGAGGATGTTGAATTGCCAGAGAAAGCAGATATTCTGATCTCTGAGCCCATGGGTACCTTGTTAGTTAATGAAAGAATGCTCGAGTCTTATGTCATTGCCAGAGATAGGTTTCTCACCCCTAATGGGAAAATGTTTCCTACAGTAGGAAGGATTCACATGGCTCCTTTCagtgatgaatatttgtttGTTGAAATTGCTAATAAGGCCCTATTTTGGCAGCAACAAAACTATTATGGTGTTGATTTGACGCCCTTACATGGGACTGCCTTTCAAGGATACTTTTCTCAGCCTGTGGTGGATGCTTTTGATCCAAGGTTATTAATAGCTGCTCCTATGTTCCATGTGATAGACTTTACCAAAATAAAGGAAGAAGAGCTATATGAAATTGACATTCCTCTCAGATTCATAGCCACTGTGGGTGCCAGGCTACATGGGCTGGCGTGTTGGTTTGATGTACTGTTCAATGGAAGTACTGCACGAAGGTGGCTTACCACTGCCCCTGGTTCACCTACAACCCACTGGTATCAGTTACGCGGTGTTCTCTCACAGCCAATATATGTTGTGGCAGGACAAGAAATTACTGGCAGGATGCACTTGATTGCCCACACTGCTCAGAGTTATACAATCTATTTAACATTGTCAGcTAAAATGTGGGGGCCTGGTGCTGAACAAGGAGGGATTCTTCAAACATCATCCTGTAAACTTGACCTGAAAGAACCTTATTATAGAATGTCTCAACCGCAAGCTTATGCACTAACCCAAGATCAGCAACCTCAGCCACTACAGACACAGGATATACACATCCAATCTCAGGATTTGGATGAAGTGGAGATAACGCAACAGCCTTCGCCTAATTCATGTGCTCCGATTGACTCCCTCATGCAGAATGCATAA 1608 0.4241 MEDLGAQKRKQREFALASVSEASFTPSRASPGVALFAGDRLQIQNESHHIALNAHLPAVQLFRLGPIESVCMVEGADAGKQTSYSSGVAIQFRNEEESEAFHCVFQQWKKEFDVQVGNLPNGTIEITSKSKFDEKIEPSSAKMYFHYYGQLLHQQNMLQDYVRTGTYYAAVIENRADFIGRVVVDVGAGSGILSLFAAQAGAKHVYAVEASEMAEYARKLIAGNPILGQRITVIKGKVEDVELPEKADILISEPMGTLLVNERMLESYVIARDRFLTPNGKMFPTVGRIHMAPFSDEYLFVEIANKALFWQQQNYYGVDLTPLHGTAFQGYFSQPVVDAFDPRLLIAAPMFHVIDFTKIKEEELYEIDIPLRFIATVGARLHGLACWFDVLFNGSTARRWLTTAPGSPTTHWYQLRGVLSQPIYVVAGQEITGRMHLIAHTAQSYTIYLTLSAKMWGPGAEQGGILQTSSCKLDLKEPYYRMSQPQAYALTQDQQPQPLQTQDIHIQSQDLDEVEITQQPSPNSCAPIDSLMQNA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1333 535 CDD AdoMet_MTases 183 286 - -
Ssu1g1333 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 147 458 IPR029063 -
Ssu1g1333 535 Pfam Ribosomal protein L11 methyltransferase (PrmA) 180 252 - -
Ssu1g1333 535 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 137 452 IPR025799 GO:0016274|GO:0018216
Ssu1g1333 535 Gene3D Vaccinia Virus protein VP39 123 284 IPR029063 -
Ssu1g1333 535 PANTHER HISTONE-ARGININE METHYLTRANSFERASE 1.4-RELATED 1 492 - -
Ssu1g1333 535 Gene3D - 286 494 - -
Ssu1g1333 535 MobiDBLite consensus disorder prediction 516 535 - -
Ssu1g1333 535 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 492 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1333 Ssu-Chr1 29335250 29347969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1333 144 434 C2H2 Transcription Factor Family AT3G12270 33.228 1.51e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1333 K05931 - gmx:100818828 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1333 1 29335250 29347969 Ssu1g1333 1 29335250 29347969 ECH
Ssu6g0323 6 5144927 5151379 Ssu1g1333 1 29335250 29347969 PCT