Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1331 AtgttgtcttcttcttcttcaccttcCTGGCTAACTTCCCCCTCATGTTCCTCTTTGGCCATAGATTCATCTTCCCCTTCAGCACAACTCCTAGTTCAGTGGTTAAGGTTCATCTTCCTATCTCCTTGTCCTCAACGACTTATTCTTTCTGCCCTTGATCTCGTCTTCTTGCTCTCTCTCTTGGCCTTTGCAGCCCACAAACTCTATTCTCGATTCACTTCCAATGCCACCTCGAACTCCACCATCACCAAACCCCTTTTGCCAGAGAAAGACTCTGACTACAAAGTTACCTTGTGGTTCAAACTACCCTTCTTGGTAACCACGCTTTTGGCCATAGCTTACACGGTTCTAGGCATCTTGGCCTTCACTCAAACCAACCTTGCATCATGGAAACTCATAGAAACACTGTTTCGGTTGCTCCAAGTAGTAGCCAACATAGCGGTAGTGATCCTAATGGTTCAGGAGAAGAAGTTCAAAGCTGCAAAGCACCCTTTATCGCTAAGAATCTATTGGATAGCAAACTTGTTGGTTTCTTGCTTGTTTGCCACTTCAGCCATTGTGCGTTTGGTACTTGTTGATGGAGCGAGGTTGGAGCTTAGTTTAAGAGTGGATGACATATTCTCATTGGTTAATCTCCCATTATCTGCGTTCCTTTTCCTAGTAGCAATGAAAGGGTCAACGGGGATTCAAGTGATCAGAATTTCTGATGTTGTGAGAACATATCAGTGCCTTTCCAATGGCAGAACTTTGAGTCCTTATGCCTATGCTTCGTTTTTCTCCAAAACAGTGTGGCTTTGGATGAACCCTTTGCTGAATAGAGGGTACAAAACACCCCTCAAGCTTGAAGACGTGCCATCCCTTCCTCTCGAATTCCGAGCAGAAAAGATGTCAGAACTCTTCCAAAGCAATTGGCCAAAGCCAGAGGAAAACAGCAAGCACCCGGTTGGACTCACCTTGTTTAGATGCTTCTGGAAGCACCTAACCTTCACTGGCCTCCTTGCAGTTATAAGACTAGCAGTTATGTATATTGGTCCAATGCTTATTCAGAGTTTTGTAGACTTCACCTCAAGGAAAGACAGCACTCCCAATGAAGGCCTTGTTCTAATACTTATCCTTTATTTGGCAAAATCAGTTGAAGTCCTCAGTGTGCATCAATTCAATTTCCACTCTCAGAAACTAGGCATGCTCATTCGTTCCAGCATCATCACTTCTGTGTACAAGAAGGGTTTGAGACTCTCAAGTTCTTCGAGGCAGGCTCATGGGACTGGCCAGATTGTGAACCACATGGCTGTTGATGCACAACAACTCTCAGATTTGATGTTGCAGTTTCACCCCATATGGTTGATGCCACTGCAAGTGGCTGCAGCTTTGGCCCTTATTTACAACTATGTTGGCTTGTCTGTGCTTGCAGCACTGATTGGAACCACTGTGGTGtttattttcactctctttcGCACCAAGAGGAGCAACAGCTTCCAGTTCCGGATAATGACGAGCCGTGACTTGAGGATGAAGGCAACGAATGAGTTGCTCAACAACATGCGTGTCATCAAGTTCCAAGCGTGGGAGGAGTACTTTGGCAACAAGATTCGGCAGTTTCGCGAAGCCGAGCACGGTTGGATTGGCAAGTTCTTGTACTATTTTGCTATTAACATGGGGGTTCTGTCCACAGCTCCCTTGTTGATAACTGTTCTCACATTTGGAACTGCTACTTTGTTGGGTGTTCCTTTGAATGCTGGCACTGTGTTCACAATAACTTCAGTGATCAAGATTTTGCAAGAGCCGGTGAGGACTTTCCCTCAGGCTCTTATCTTGATTTCTCAAGCAATGATTTCCCTTGGGAGGTTGGATGAGTTCATGACGAGTAAGGAAATGGATGAGGGTGCAGTGCAGAGAGTGGAGGGCTGTGATGGCGACACGGCCGTGGAGATAAAAGATGGGGAATTCTCATGGGCTGATGCAGAAGGGAATGTGGCTCTGAAAGTTGAAGAGTTGGAAATTAAGAAAGGGGACCTTGCTGCTGTTGTGGGAACAGTTGGGTCAGGCAAGTCTTCGTTATTGGCTTCTGTGTTGGGGGAAATGTTCAAGATATCAGGAAAGatcagagtttgtGGGTCAGTAGCCTATGTGGCGCAGACATCATGGATTCAGAATGCAACCATTCAAGACAACATATTGTTTGGTTTACCAATGAACAGAGAGAAGTACAGAGAAGCTATAAGAGTGTGCTGCCTGGAAACGGATCTTGAAATGATGGAACATGGGGACCAGACTGAGATTGGAGAACGGGGTATTAACCTCAGTGGTGGCCAGAAGCAACGTGTACAACTTGCTAGAGCTGTATACCAAGACTGTGACATCTATCTCCTTGATGATGTATTAAGTGCTGTTGATGCACAAACAggatcatttatttttaagGAATGTATCATGGGAGCTCTCAAAAATAAGACCATTTTACTTGTAACCCACCAAGTTGACTTCTTGCATAACGTTGACCTTATAATGGTGATGCGAGAAGGGAGAATCGTGCAAAGTGGGAAGTACGATGAACTTATCAAAGCAGGCCTGGATTTTGGTGCACTTGTGGCTGCTCATGAATCCTCTATGGAGATTGCAGAGTCTAGTGATAACAAAGGTGGTGATGATTCTGCTCAGTCTCCAAAACTGGCTCGCGTCccttcaaaagaaaaggaaaacgcAGGTGAAAAGCAACCTCAAGATCAATCCAAGTCAGATAAGGCTAAAGCGAAGCTCATTGAAGATGAGGAAAGAGAAACTGGCCGTGTGGACCTTAGAGTATATAAACATTATTTCACTGAAGCATTTGGGTGGTGGGGTGTTGCACTGATGCTGGCAATGTCTCTAGCATGGATTTTATCCTTTTGGCTGGTGACTACTGGCTAG 2907 0.4389 MLSSSSSPSWLTSPSCSSLAIDSSSPSAQLLVQWLRFIFLSPCPQRLILSALDLVFLLSLLAFAAHKLYSRFTSNATSNSTITKPLLPEKDSDYKVTLWFKLPFLVTTLLAIAYTVLGILAFTQTNLASWKLIETLFRLLQVVANIAVVILMVQEKKFKAAKHPLSLRIYWIANLLVSCLFATSAIVRLVLVDGARLELSLRVDDIFSLVNLPLSAFLFLVAMKGSTGIQVIRISDVVRTYQCLSNGRTLSPYAYASFFSKTVWLWMNPLLNRGYKTPLKLEDVPSLPLEFRAEKMSELFQSNWPKPEENSKHPVGLTLFRCFWKHLTFTGLLAVIRLAVMYIGPMLIQSFVDFTSRKDSTPNEGLVLILILYLAKSVEVLSVHQFNFHSQKLGMLIRSSIITSVYKKGLRLSSSSRQAHGTGQIVNHMAVDAQQLSDLMLQFHPIWLMPLQVAAALALIYNYVGLSVLAALIGTTVVFIFTLFRTKRSNSFQFRIMTSRDLRMKATNELLNNMRVIKFQAWEEYFGNKIRQFREAEHGWIGKFLYYFAINMGVLSTAPLLITVLTFGTATLLGVPLNAGTVFTITSVIKILQEPVRTFPQALILISQAMISLGRLDEFMTSKEMDEGAVQRVEGCDGDTAVEIKDGEFSWADAEGNVALKVEELEIKKGDLAAVVGTVGSGKSSLLASVLGEMFKISGKIRVCGSVAYVAQTSWIQNATIQDNILFGLPMNREKYREAIRVCCLETDLEMMEHGDQTEIGERGINLSGGQKQRVQLARAVYQDCDIYLLDDVLSAVDAQTGSFIFKECIMGALKNKTILLVTHQVDFLHNVDLIMVMREGRIVQSGKYDELIKAGLDFGALVAAHESSMEIAESSDNKGGDDSAQSPKLARVPSKEKENAGEKQPQDQSKSDKAKAKLIEDEERETGRVDLRVYKHYFTEAFGWWGVALMLAMSLAWILSFWLVTTG 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1331 968 MobiDBLite consensus disorder prediction 892 920 - -
Ssu1g1331 968 CDD ABCC_MRP_domain1 642 842 - -
Ssu1g1331 968 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Ssu1g1331 968 Pfam ABC transporter 664 792 IPR003439 GO:0005524
Ssu1g1331 968 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Ssu1g1331 968 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 608 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g1331 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 861 IPR027417 -
Ssu1g1331 968 MobiDBLite consensus disorder prediction 873 920 - -
Ssu1g1331 968 SMART AAA_5 669 850 IPR003593 -
Ssu1g1331 968 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 63 963 - -
Ssu1g1331 968 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 865 IPR003439 GO:0005524
Ssu1g1331 968 Gene3D ABC transporter type 1, transmembrane domain 312 625 IPR036640 GO:0005524|GO:0016021
Ssu1g1331 968 Pfam ABC transporter transmembrane region 328 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g1331 968 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 63 963 - -
Ssu1g1331 968 SUPERFAMILY ABC transporter transmembrane region 318 624 IPR036640 GO:0005524|GO:0016021
Ssu1g1331 968 Gene3D - 636 868 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1331 Ssu-Chr1 29303143 29307851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1331 642 895 Calmodulin-binding Proteins AT2G36910 29.348 4.51e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1331 - K05665 gmx:100780167 1650.57