Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1330 ATGTCCAGATCACTCTTATTTACCTACTGGGGTCTAAAGACATCTCAAAGCTTCTTCAGTGGAATGCTTCAAAGCATCCTGCATGCACCGATGTCGTTCTTTGACACCACTCCCTCTGGCAGAATTTTGAGTCGTGTATCTACTGATATACTTTGGGTTGATATATCAATTCCAATGTTAGTTAACTTTGTAATGGTCGCGTACTTCTCATTGGTCAGCATCCTAGTTGTAACATGCCAAAATGCTTGGGAAACGGTCTTCCTCTTAATTCCACTGTTCTGGCTGAATAACTGGTATCGGAAATATTACCTTGCATCTTCTCGGGAATTGACACGCCTTGATTCTATCACCAAAGCTCCTGTGATTCATCACTTTTCAGAAACCATTGCTGGTGTTATGACCATTCGTGGCTTCAGGAAGCAGAACGCATTTTGTCAAGAAAATATTGACAGGGTCAATGCTAGTCTGAGAATGGATTTCCACAACAATGGTGCTAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGCATTGCCACTATTTTTATGATCTTTTTGCCAAGTGCTATTATTAGGCCAGAATATGTTGGTTTGTCTTTGTCCTATGGCCTGGCTCTCAGTAGTCTCTTGTCATTTACCATAACAATGACTTGCTCTGTTGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCTCCATGGAAAATTGCAGATAGGTCTCCCCCTCAGAATTGGCCCAGTCAAGGCAATATTGAGTTAAACAACTTGCAGGTTCGGTATCGGCCAAATACTCCTCTGGTTCTCAAGGGAATCTCTCTCACCATTCAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGTACAGGGAGTGGGAAATCAACCCTCATTCAGGTGTTATTTAGGTTGATTGAGCCTTCGGCTGGGAAAATAACTGTTGATGGGATCAACATTTGCACTGTTGGTCTTCATGATCTGAGGTCTCGATTTGGAATTATTCCTCAAGAGCCTGTCCTCTTTAAAGGAACTGTACGAAGCAACATTGACCCCCTTGGACTGTATTCAGAAGAAGAAATTTGGAAGAGCCTTGAGCGCTGCCAACTGAAAGATGTGGTGGCTGCAAAGCCTGAGAAACTTGAGGCTTCAGtgGTTGATGGTGGAGACAATTGGAGTGTGGGGCAAAGGCAGCTACTTTGCTTGGGAAGGATCATGCTAAAACGCAGCAAAATACTATTCATGGATGAGGCAACAGCATCCGTTGATTCACAAACTGATGCTGTGATACAGAATATCATCCGTGAGGACTTTGCAGATCGTACAATTGTCAGCATTGCTCATAGAATACCAACAGTCATGGATTGTGACAGGGTTTTAGTCATTGATGCAGGCCATGCAAAGGAATTTGACAAGCCATCACGATTGCTAGAAAGGCCTTCACTTTTTGGGGCATTGGTTAAGGAGTACTCGAATAGATCTGCTTAA 1515 0.4297 MSRSLLFTYWGLKTSQSFFSGMLQSILHAPMSFFDTTPSGRILSRVSTDILWVDISIPMLVNFVMVAYFSLVSILVVTCQNAWETVFLLIPLFWLNNWYRKYYLASSRELTRLDSITKAPVIHHFSETIAGVMTIRGFRKQNAFCQENIDRVNASLRMDFHNNGANEWLGFRLDYMGVVFLCIATIFMIFLPSAIIRPEYVGLSLSYGLALSSLLSFTITMTCSVENKMVSVERIKQFTNLPSEAPWKIADRSPPQNWPSQGNIELNNLQVRYRPNTPLVLKGISLTIQGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGKITVDGINICTVGLHDLRSRFGIIPQEPVLFKGTVRSNIDPLGLYSEEEIWKSLERCQLKDVVAAKPEKLEASVVDGGDNWSVGQRQLLCLGRIMLKRSKILFMDEATASVDSQTDAVIQNIIREDFADRTIVSIAHRIPTVMDCDRVLVIDAGHAKEFDKPSRLLERPSLFGALVKEYSNRSA 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1330 504 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 504 - -
Ssu1g1330 504 CDD ABC_6TM_ABCC_D2 1 239 IPR044726 GO:0140359
Ssu1g1330 504 SMART AAA_5 290 474 IPR003593 -
Ssu1g1330 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 497 IPR027417 -
Ssu1g1330 504 Pfam ABC transporter transmembrane region 3 191 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g1330 504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 227 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu1g1330 504 SUPERFAMILY ABC transporter transmembrane region 3 244 IPR036640 GO:0005524|GO:0016021
Ssu1g1330 504 CDD ABCC_MRP_domain2 262 482 - -
Ssu1g1330 504 Pfam ABC transporter 281 429 IPR003439 GO:0005524
Ssu1g1330 504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 264 498 IPR003439 GO:0005524
Ssu1g1330 504 Gene3D ABC transporter type 1, transmembrane domain 1 245 IPR036640 GO:0005524|GO:0016021
Ssu1g1330 504 Gene3D - 248 496 IPR027417 -
Ssu1g1330 504 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1330 Ssu-Chr1 29298783 29303053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1330 23 497 Calmodulin-binding Proteins AT2G36910 23.838 1.99e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1330 - K05665 gmx:100780167 955.666