Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1327 ATGCCGCAGGGCAatgccgccgccgccgccacagCGCTGTTGGACCACGGCGGCGATGCCGGCGACGCCGTCATGGCGCGGTGGCTGCAGTCCGCCGGCTTGCAGCACCTCGCCTCTCCCCTCGCTTCGACCGCCATCGATCATCGCCTCCTCCCCAACCTTCTCATGCAGGGTTATGGAGCGCAGTCTGCTGAAGAGAAGCAGAGGCTTTTGAAGTTAATGAGAAACCTCAATTTTAATGGGGAATCTGGTTCAGAGCCATATACGCCCACTGCCCAGTCTTTAGGTGGAGTGGCTGCGTCGGATGGGTTTTATTCTCCTGAGTTCAGGGGGGATTTTGGAGCTGGGCTTTTGGATCTTCATGCTATGGATGATACAGAGCTTTTGTCTGAGCATGTAGTTTCAGAACCTTTTGAGCCATCACCCTTCATGCCTGGAGATACTAGAGTATTTGAAGACGATTTCAATCCAATTAGCAGCAAGCTGGAAAGCGGGGAAGCAGATGCTGATGCATCAATTTCTTTACCTATGAATGATAAAGAGTATAGCACAAGGGAAAATAATGTTGCTAAGATTAGAGTTGTGGTACGCAAAAGACCTTTAAACAAGAAGGAGCTTGCTAAGAAGGAGGATGATATTGTAACTGTATCTGATAATACATATTTGACAGTCCATGAACCGAAACTAAAGGTTGATTTGACGGCTTATGTGGAGAAGCATGAGTTTTGTTTTGATGCTGTGCTTGATGAGCATGTTACCAATGATGAAGTATACCGAACTACAGTTGAACCAATTATTCCTACAATTTTTGAGCGAACCAAAGCTACCTGTTTTGCTTATGGTCAGACAGGTAGTGGCAAAACATACACAATGCAACCTTTACCACTCAGAGCTGCAGAAGACCTTGTTCGACAGTTGCATCAGCCAGTTTACCGGAATCAGAGATTTAAATTGTGGCTCAGCTACTTTGAGATATATGGTGGAAAACTTTATGATCTTCTTAGTGACAGAAAGAAACTTTGCATGAGGGAAGATGGACGACAGCAAGTTTGCATTGTAGGACTACAAGAATTTGAAGTTTCTGATGTACAAATTGTCAGAGAATTCATTGAAAAGGGAAATGCTGCAAGAAGTACAGGATCCACTGGTGCTAATGAGGAGTCCTCCAGGTCACATGCTATCTTACAACTGGCTGTAAAGAAGCACAGTGAAGTGAAAGAGAGCAAGCGGAACAATGATGGGAATGAGGCAAGAAGTGGGAAGGTTGTgggaaaaatttcttttattgatcTTGCTGGAAGTGAACGAGGTGCTGACACTACTGATAATGATCGTCAGACACGGATTGAAGGAGCAGAAATCAATAAGAGCCTTTTGGCATTGAAGGAGTGCATTCGTGCTTTAGATAATGACCAGATCCATATTCCATTTCGGGGAAGCAAACTTACAGAAGTGCTTCGTGACTCCTTTGTGGGTAATTCGAAAACTGTTATGATCTCTTGTATATCTCCAGGTGCTGGGTCTTGTGAACACACACTTAATACCTTGAGATACGCAGATCGGGTTAAAAGTCTATCCAAAAGTGGGAATCCTAGAAAAGACCAGGTCCCAAATCCTGTACCACAAACTAATAAGGAGGTTTCGTCCACATCATCCTTTCCGCCTAGTGCTGGTGCAGAGGATTTTAATGATCAACGTCAAGAGAAAACAATGGATATGGCAGGAAATTTGTCGAAAAGGAAAATTCTTTGTACAACTCTGCTGCTTCTGTTGACAAACAGCCATtaa 1788 0.4318 MPQGNAAAAATALLDHGGDAGDAVMARWLQSAGLQHLASPLASTAIDHRLLPNLLMQGYGAQSAEEKQRLLKLMRNLNFNGESGSEPYTPTAQSLGGVAASDGFYSPEFRGDFGAGLLDLHAMDDTELLSEHVVSEPFEPSPFMPGDTRVFEDDFNPISSKLESGEADADASISLPMNDKEYSTRENNVAKIRVVVRKRPLNKKELAKKEDDIVTVSDNTYLTVHEPKLKVDLTAYVEKHEFCFDAVLDEHVTNDEVYRTTVEPIIPTIFERTKATCFAYGQTGSGKTYTMQPLPLRAAEDLVRQLHQPVYRNQRFKLWLSYFEIYGGKLYDLLSDRKKLCMREDGRQQVCIVGLQEFEVSDVQIVREFIEKGNAARSTGSTGANEESSRSHAILQLAVKKHSEVKESKRNNDGNEARSGKVVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSKTVMISCISPGAGSCEHTLNTLRYADRVKSLSKSGNPRKDQVPNPVPQTNKEVSSTSSFPPSAGAEDFNDQRQEKTMDMAGNLSKRKILCTTLLLLLTNSH 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1327 595 Pfam Kinesin motor domain 197 524 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 ProSitePatterns Kinesin motor domain signature. 424 435 IPR019821 GO:0003777|GO:0005524|GO:0007018
Ssu1g1327 595 PRINTS Kinesin heavy chain signature 382 399 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 PRINTS Kinesin heavy chain signature 272 293 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 PRINTS Kinesin heavy chain signature 425 443 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 PANTHER KINESIN-LIKE PROTEIN 1 576 - -
Ssu1g1327 595 ProSiteProfiles Kinesin motor domain profile. 191 525 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 MobiDBLite consensus disorder prediction 529 558 - -
Ssu1g1327 595 Gene3D Kinesin motor domain 171 528 IPR036961 -
Ssu1g1327 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 525 IPR027417 -
Ssu1g1327 595 SMART kinesin_4 189 531 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu1g1327 595 MobiDBLite consensus disorder prediction 525 563 - -
Ssu1g1327 595 CDD KISc_KIF2_like 191 523 - -
Ssu1g1327 595 PANTHER KINESIN-RELATED PROTEIN 6 1 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1327 Ssu-Chr1 29251703 29259044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1327 177 525 Calmodulin-binding Proteins AT5G65930 34.349 6.42e-45 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1327 K10393 - gmx:100800014 1074.31